diff dada2_datatype.py @ 2:d49c2d86b95c draft

planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty

--- a/dada2_datatype.py	Fri Mar 08 08:44:46 2019 -0500
+++ b/dada2_datatype.py	Tue Apr 09 07:12:07 2019 -0400
@@ -34,6 +34,11 @@
 class dada_dada( RData ):
     """
     datatype for dada2's dada-class
+
+    note: intended to implement this as table + Rdata like the other data types
+    problem is that in non-batch mode the dada wrapper uses discover_datasets
+    to get the collection elements and there is currently no way to set extra 
+    files when doing this.
     """
     file_ext = "dada2_dada"
     blurb = "result of dada"
@@ -46,6 +51,7 @@
     - additional file contains the Rdata
     """
     file_ext = "dada2_errorrates"
+    composite_type = 'basic'
     blurb = "learned error rates"
     def __init__(self, **kwd):
         """Initialize derep datatype"""
@@ -60,6 +66,7 @@
     - the data is stored as table (wo additional Rdata)
     """
     file_ext = "dada2_mergepairs"
+    composite_type = 'basic'
     blurb = "merged reads"
     def __init__(self, **kwd):
         """Initialize derep datatype"""