Mercurial > repos > matthias > daa_meganizer
changeset 2:bddb48f621d5 draft default tip
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/megan commit 20ad8976adec9d011d21484859258bf1ad22f42e-dirty
| author | matthias |
|---|---|
| date | Wed, 19 Dec 2018 04:43:22 -0500 |
| parents | f318c4652e44 |
| children | |
| files | daa-meganizer.xml macros.xml test-data/diamond_results.rma test-data/diamond_results_meganized.daa |
| diffstat | 4 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/daa-meganizer.xml Mon Nov 05 03:44:19 2018 -0500 +++ b/daa-meganizer.xml Wed Dec 19 04:43:22 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="daa_meganizer" name="daa-meganizer" version="2.2.4"> +<tool id="daa_meganizer" name="daa-meganizer" version="@TOOL_VERSION@" profile="18.09"> <description>Prepare DIAMOND daa file for use with MEGAN</description> <macros> <import>macros.xml</import> @@ -41,7 +41,7 @@ <tests> <test> <param name="in" ftype="daa" value="diamond_results.daa"/> - <output name="output" ftype="daa" value="diamond_results_meganized.daa" /> + <output name="output" ftype="daa" value="diamond_results_meganized.daa" compare="sim_size" /> </test> </tests> <help><![CDATA[
--- a/macros.xml Mon Nov 05 03:44:19 2018 -0500 +++ b/macros.xml Wed Dec 19 04:43:22 2018 -0500 @@ -9,7 +9,8 @@ <xml name="stdio"> <stdio> <exit_code level="fatal" range="1:" description="Error"/> - </stdio> + <regex match="There is insufficient memory for the Java Runtime Environment" source="stdout" level="fatal_oom" description="Out of memory" /> + </stdio> </xml> <xml name="version_command"> <version_command><![CDATA[./daa2rma |& grep version | sed 's/.*version \([0-9.]\+\),.*/\1/']]></version_command>