# HG changeset patch
# User matthias
# Date 1545212602 18000
# Node ID bddb48f621d53b234be4845af9a8dcb80ad8b839
# Parent  f318c4652e4461d485d4a4b1df25f6ead931863d
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/megan commit 20ad8976adec9d011d21484859258bf1ad22f42e-dirty

diff -r f318c4652e44 -r bddb48f621d5 daa-meganizer.xml
--- a/daa-meganizer.xml	Mon Nov 05 03:44:19 2018 -0500
+++ b/daa-meganizer.xml	Wed Dec 19 04:43:22 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="daa_meganizer" name="daa-meganizer" version="2.2.4">
+<tool id="daa_meganizer" name="daa-meganizer" version="@TOOL_VERSION@" profile="18.09">
     <description>Prepare DIAMOND daa file for use with MEGAN</description>
     <macros>
         <import>macros.xml</import>
@@ -41,7 +41,7 @@
     <tests>
         <test>
             <param name="in" ftype="daa" value="diamond_results.daa"/>
-            <output name="output" ftype="daa" value="diamond_results_meganized.daa" />
+            <output name="output" ftype="daa" value="diamond_results_meganized.daa" compare="sim_size" />
        </test>
     </tests>
     <help><![CDATA[
diff -r f318c4652e44 -r bddb48f621d5 macros.xml
--- a/macros.xml	Mon Nov 05 03:44:19 2018 -0500
+++ b/macros.xml	Wed Dec 19 04:43:22 2018 -0500
@@ -9,7 +9,8 @@
     <xml name="stdio">
         <stdio>
             <exit_code level="fatal" range="1:" description="Error"/>
-        </stdio>
+            <regex match="There is insufficient memory for the Java Runtime Environment" source="stdout" level="fatal_oom" description="Out of memory" />
+    </stdio>
     </xml>
     <xml name="version_command">
         <version_command><![CDATA[./daa2rma |& grep version | sed 's/.*version \([0-9.]\+\),.*/\1/']]></version_command>
diff -r f318c4652e44 -r bddb48f621d5 test-data/diamond_results.rma
Binary file test-data/diamond_results.rma has changed
diff -r f318c4652e44 -r bddb48f621d5 test-data/diamond_results_meganized.daa
Binary file test-data/diamond_results_meganized.daa has changed