# HG changeset patch
# User matthias
# Date 1545212650 18000
# Node ID 102d29c7c5a730f823af635f3b293f6096d38e7f
# Parent  c15cfe82054a815d9c56239bae77fa0e77ac6939
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/megan commit 20ad8976adec9d011d21484859258bf1ad22f42e-dirty

diff -r c15cfe82054a -r 102d29c7c5a7 daa2rma.xml
--- a/daa2rma.xml	Mon Nov 05 03:45:27 2018 -0500
+++ b/daa2rma.xml	Wed Dec 19 04:44:10 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="daa2rma" name="daa2rma" version="2.2.4">
+<tool id="daa2rma" name="daa2rma" version="@TOOL_VERSION@" profile="19.01">
     <description>Compute a MEGAN rma6 file from a DIAMOND daa file</description>
     <macros>
         <import>macros.xml</import>
@@ -43,7 +43,7 @@
     <tests>
         <test>
             <param name="in" ftype="daa" value="diamond_results.daa"/>
-            <output name="rma" ftype="rma6" value="diamond_results.rma" />
+            <output name="rma" ftype="rma6" value="diamond_results.rma" compare="sim_size" />
        </test>
     </tests>
     <help><![CDATA[
diff -r c15cfe82054a -r 102d29c7c5a7 macros.xml
--- a/macros.xml	Mon Nov 05 03:45:27 2018 -0500
+++ b/macros.xml	Wed Dec 19 04:44:10 2018 -0500
@@ -9,7 +9,8 @@
     <xml name="stdio">
         <stdio>
             <exit_code level="fatal" range="1:" description="Error"/>
-        </stdio>
+            <regex match="There is insufficient memory for the Java Runtime Environment" source="stdout" level="fatal_oom" description="Out of memory" />
+    </stdio>
     </xml>
     <xml name="version_command">
         <version_command><![CDATA[./daa2rma |& grep version | sed 's/.*version \([0-9.]\+\),.*/\1/']]></version_command>
diff -r c15cfe82054a -r 102d29c7c5a7 test-data/diamond_results.rma
Binary file test-data/diamond_results.rma has changed
diff -r c15cfe82054a -r 102d29c7c5a7 test-data/diamond_results_meganized.daa
Binary file test-data/diamond_results_meganized.daa has changed