# HG changeset patch # User Matt Shirley # Date 1371519687 14400 # Node ID a1255154fa3f96f504e2abfa5e25b4398b407301 # Parent 46adf78139ee6ea1dba1da14651a089e8755d046 tweaks to fastq-dump command diff -r 46adf78139ee -r a1255154fa3f fastq_dump.xml --- a/fastq_dump.xml Mon Jun 17 21:28:00 2013 -0400 +++ b/fastq_dump.xml Mon Jun 17 21:41:27 2013 -0400 @@ -1,6 +1,6 @@ format reads from NCBI SRA. - fastq-dump --log-level fatal --report never --accession '${input.name}' --stdout $split $aligned '$input' > $output + fastq-dump --log-level fatal --accession '${input.name}' --stdout $split $aligned '$input' > $output fastq-dump --version diff -r 46adf78139ee -r a1255154fa3f sra.py --- a/sra.py Mon Jun 17 21:28:00 2013 -0400 +++ b/sra.py Mon Jun 17 21:41:27 2013 -0400 @@ -1,5 +1,5 @@ """ -Sra class +SRA class """ import logging import binascii