# HG changeset patch # User Matt Shirley # Date 1375704567 14400 # Node ID 1d152e8cb375b349375594e9b3b258d6bb85f226 # Parent a0925f507352fddaabd15b08c5a4679077e41942 add fastq output option to sam dump diff -r a0925f507352 -r 1d152e8cb375 sam_dump.xml --- a/sam_dump.xml Sun Aug 04 23:17:53 2013 -0400 +++ b/sam_dump.xml Mon Aug 05 08:09:27 2013 -0400 @@ -25,6 +25,9 @@ #if (str( $primary ) == "yes") and (str ( $alignments != "unaligned") ): --primary #end if + #if str( $fastq ) == "yes": + --fastq + #end if #if $input.input_select == "file": $input.file #else: @@ -65,6 +68,11 @@ + + + + +