# HG changeset patch
# User Matt Shirley <mdshw5@gmail.com>
# Date 1371674673 14400
# Node ID 064f4fb1af40f90f1c8f88aeb41d210586bad6da
# Parent  423f3eb064280331d847add404305b92087c4fcd
added vdb-validate tool

diff -r 423f3eb06428 -r 064f4fb1af40 sra_validate.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sra_validate.xml	Wed Jun 19 16:44:33 2013 -0400
@@ -0,0 +1,22 @@
+<tool id="sra_validate" name="Validate sra" version="1.0.2">
+  <description> and report any errors.</description>
+  <command>vdb-validate -md5 '$input' 2> $output </command>
+  <version_string>vdb-validate --version</version_string>
+  <inputs>
+    <param format="sra" name="input" type="data" label="sra archive"/>
+  </inputs>
+  <outputs>
+    <data format="text" name="output"/>
+  </outputs>
+  <stdio>
+    <exit_code range="127" level="fatal" description="Cannot find vdb-validate binary"/>
+  </stdio>
+  <requirements>
+    <requirement type="package" version="2.3.2-4">sra_toolkit</requirement>
+  </requirements>
+  <help>
+    This tool checks the data integrity of an sra archive using vdb-validate. 
+    The vdb-validate program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software.
+    Contact Matt Shirley at mdshw5@gmail.com for support and bug reports.
+  </help>
+</tool>