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debug prefetch caching and accession input for fastq_dump
author Matt Shirley <mdshw5@gmail.com>
date Sat, 29 Jun 2013 16:01:28 -0400
parents 423f3eb06428
children 4da2d7f0128e
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<tool id="sra_fetch" name="Fetch sra run" version="1.0.3">
  <description> by accession from NCBI sra.</description>
  <command interpreter="python">sra_fetch.py --accession '$accession' --out '$output'</command>
  <inputs>
    <param name="accession" size="13" type="text" value="SRR000001" label="sra run accession"/>
  </inputs>
  <outputs>
    <data format="sra" name="output" label="Fetch sra ${accession.value}"/>
  </outputs>
  <help>
    This tool fetches sra archives by accession from NCBI over ftp.
  </help>
</tool>