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view sra_fetch.xml @ 17:c57efec65750 draft

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updates to SRA datatype
author Matt Shirley <mdshw5@gmail.com>
date Mon, 17 Jun 2013 20:37:28 -0400
parents 078b8e168b0c
children d850324e82cf
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<tool id="sra_fetch" name="Fetch SRA" version="1.0.2">
  <description> by accession from NCBI SRA.</description>
  <command interpreter="python">sra_fetch.py --accession '$accession' --out '$output'</command>
  <inputs>
    <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/>
  </inputs>
  <outputs>
    <data format="sra" name="output" label="Fetch ${accession.value}"/>
  </outputs>
  <requirements>
    <requirement type="python">sra_fetch.py</requirement>
  </requirements>
  <help>
    This tool fetches SRA archives from NCBI over FTP using the python ftplib.
  </help>
</tool>