Mercurial > repos > matt-shirley > sra_tools
view sra_pileup.xml @ 37:4da2d7f0128e draft
Exposed more options for fastq_dump and sam_dump
author | Matt Shirley <mdshw5@gmail.com> |
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date | Thu, 01 Aug 2013 13:57:27 -0400 |
parents | 4985f8c00366 |
children | a0925f507352 |
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<tool id="sra_pileup" name="Generate pileup format" version="1.0.0"> <description> from NCBI sra.</description> <command>sra-pileup '$input' > $output</command> <version_string>sra-pileup --version</version_string> <inputs> <param format="sra" name="input" type="data" label="sra archive"/> </inputs> <outputs> <data format="sam" name="output"/> </outputs> <requirements> <requirement type="package" version="2.3.2-4">sra_toolkit</requirement> </requirements> <help> !!! Note that this tool does not function correctly !!! This tool produces pileup format from sra archives using sra-pileup. The sra-pileup program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. Contact Matt Shirley at mdshw5@gmail.com for support and bug reports. </help> </tool>