Mercurial > repos > matt-shirley > sra_tools
diff sra_pileup.xml @ 22:423f3eb06428 draft
more fixes for sra datatype, added sra_pileup
| author | Matt Shirley <mdshw5@gmail.com> |
|---|---|
| date | Wed, 19 Jun 2013 14:11:37 -0400 |
| parents | |
| children | 4985f8c00366 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/sra_pileup.xml Wed Jun 19 14:11:37 2013 -0400 @@ -0,0 +1,19 @@ +<tool id="sra_pileup" name="Generate pileup format" version="1.0.0"> + <description> from NCBI sra.</description> + <command>sra-pileup '$input' > $output</command> + <version_string>sra-pileup --version</version_string> + <inputs> + <param format="sra" name="input" type="data" label="sra archive"/> + </inputs> + <outputs> + <data format="sam" name="output"/> + </outputs> + <requirements> + <requirement type="package" version="2.3.2-4">sra_toolkit</requirement> + </requirements> + <help> + This tool produces pileup format from sra archives using sra-pileup. + The sra-pileup program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. + Contact Matt Shirley at mdshw5@gmail.com for support and bug reports. + </help> +</tool>