Mercurial > repos > matt-shirley > sra_tools

diff sam_dump.xml @ 22:423f3eb06428 draft

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more fixes for sra datatype, added sra_pileup
author Matt Shirley <mdshw5@gmail.com>
date Wed, 19 Jun 2013 14:11:37 -0400
parents d850324e82cf
children 4da2d7f0128e
line wrap: on
line diff
--- a/sam_dump.xml	Wed Jun 19 13:31:58 2013 -0400
+++ b/sam_dump.xml	Wed Jun 19 14:11:37 2013 -0400
@@ -1,5 +1,5 @@
 <tool id="sam_dump" name="Extract SAM" version="1.0.2">
-  <description> format reads from NCBI SRA.</description>
+  <description> format reads from NCBI sra.</description>
   <command>sam-dump $header $aligned $primary '$input' > $output</command>
   <version_string>sam-dump --version</version_string>
   <inputs>
@@ -27,7 +27,7 @@
     <requirement type="package" version="2.3.2-4">sra_toolkit</requirement>
   </requirements>
   <help>
-    This tool extracts SAM format reads from SRA archives using sam-dump. 
+    This tool extracts sam format reads from sra archives using sam-dump. 
     The sam-dump program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software.
     Contact Matt Shirley at mdshw5@gmail.com for support and bug reports.
   </help>