Mercurial > repos > matt-shirley > sra_tools

diff fastq_dump.xml @ 1:28fda7631857 draft

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minor fixes
author Matt Shirley <mdshw5@gmail.com>
date Wed, 29 May 2013 22:08:19 -0400
parents ffdd41766195
children cdba74ec9eca
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--- a/fastq_dump.xml	Tue Nov 27 13:44:28 2012 -0500
+++ b/fastq_dump.xml	Wed May 29 22:08:19 2013 -0400
@@ -1,6 +1,6 @@
 <tool id="fastq_dump" name="Extract fastq" version="1.0.0">
   <description> format reads from NCBI SRA.</description>
-  <command>./fastq-dump --log-level fatal --report never --accession '${input.name}' --stdout $split $aligned '$input' > $output </command>
+  <command>fastq-dump --log-level fatal --report never --accession '${input.name}' --stdout $split $aligned '$input' > $output </command>
   <version_string>fastq-dump --version</version_string>
   <inputs>
     <param format="sra" name="input" type="data" label="sra archive"/>