Mercurial > repos > matt-shirley > sra_tools
comparison tool_dependencies.xml @ 7:d28dad5e2c02 draft
debugging automatic SRA build and install
author | Matt Shirley <mdshw5@gmail.com> |
---|---|
date | Mon, 17 Jun 2013 13:37:47 -0400 |
parents | 3354ec70c0ff |
children | e40b9582d80f |
comparison
equal
deleted
inserted
replaced
6:3354ec70c0ff | 7:d28dad5e2c02 |
---|---|
3 <package name="sra_toolkit" version="2.3.2-4"> | 3 <package name="sra_toolkit" version="2.3.2-4"> |
4 <install version="1.0"> | 4 <install version="1.0"> |
5 <actions> | 5 <actions> |
6 <action type="download_by_url">http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.3.2-4/sra_sdk-2.3.2-4.tar.gz</action> | 6 <action type="download_by_url">http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.3.2-4/sra_sdk-2.3.2-4.tar.gz</action> |
7 <action type="shell_command">make release</action> | 7 <action type="shell_command">make release</action> |
8 <action type="shell_command">make dynamic</action> | |
8 <action type="shell_command">make</action> | 9 <action type="shell_command">make</action> |
9 <action type="shell_command">bash -c "if [[ $(uname -m) =~ x86_64 ]]; then export BIN='bin64'; elif [[ $(uname -m) =~ i.86 ]]; then export BIN='bin32'; fi"</action> | 10 <action type="shell_command">mv bin* $INSTALL_DIR/bin</action> |
10 <action type="shell_command">mv bin32/* $INSTALL_DIR/bin</action> | |
11 <action type="shell_command">mv bin64/* $INSTALL_DIR/bin</action> | |
12 <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action> | 11 <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action> |
13 </actions> | 12 </actions> |
14 </install> | 13 </install> |
15 <readme>Tools from NCBI SRA Toolkit for extracting FASTQ and SAM format reads from SRA format archives. Various tools for working with SRA from NCBI. | 14 <readme>Tools from NCBI SRA Toolkit for extracting FASTQ and SAM format reads from SRA format archives. Various tools for working with SRA from NCBI. |
16 This software release was designed to run under Linux, MacOSX operating systems on Intel x86-compatible 32 and 64 bit architectures. | 15 This software release was designed to run under Linux, MacOSX operating systems on Intel x86-compatible 32 and 64 bit architectures. |