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comparison tool_dependencies.xml @ 9:bdb991750a00 draft

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debugging automatic SRA build and install
author Matt Shirley <mdshw5@gmail.com>
date Mon, 17 Jun 2013 14:07:05 -0400
parents e40b9582d80f
children 384f93a14b47
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8:e40b9582d80f 9:bdb991750a00
5 <actions> 5 <actions>
6 <action type="download_by_url">http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.3.2-4/sra_sdk-2.3.2-4.tar.gz</action> 6 <action type="download_by_url">http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.3.2-4/sra_sdk-2.3.2-4.tar.gz</action>
7 <action type="shell_command">make release</action> 7 <action type="shell_command">make release</action>
8 <action type="shell_command">make dynamic</action> 8 <action type="shell_command">make dynamic</action>
9 <action type="shell_command">make</action> 9 <action type="shell_command">make</action>
10 <action type="make_directory">$INSTALL_DIR/bin</action>
10 <action type="shell_command">cp --recursive --dereference bin64/* $INSTALL_DIR/bin</action> 11 <action type="shell_command">cp --recursive --dereference bin64/* $INSTALL_DIR/bin</action>
11 <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action> 12 <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action>
12 </actions> 13 </actions>
13 </install> 14 </install>
14 <readme>Tools from NCBI SRA Toolkit for extracting FASTQ and SAM format reads from SRA format archives. Various tools for working with SRA from NCBI. 15 <readme>Tools from NCBI SRA Toolkit for extracting FASTQ and SAM format reads from SRA format archives. Various tools for working with SRA from NCBI.