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comparison fastq_dump.xml @ 35:a93bb9eb93c5 draft

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properly end conditional statements
author Matt Shirley <mdshw5@gmail.com>
date Sun, 30 Jun 2013 19:23:07 -0400
parents 7803126704c6
children b5274b0e61bc
comparison
equal deleted inserted replaced
34:7803126704c6 35:a93bb9eb93c5
10 --stdout 10 --stdout
11 $split 11 $split
12 $aligned 12 $aligned
13 #if str( $param_type.minID ) != "": 13 #if str( $param_type.minID ) != "":
14 --minSpotId $minID 14 --minSpotId $minID
15 #end if
15 #if str( $param_type.maxID ) != "": 16 #if str( $param_type.maxID ) != "":
16 --minSpotId $maxID 17 --minSpotId $maxID
18 #end if
17 #if str( $param_type.minlen ) != "": 19 #if str( $param_type.minlen ) != "":
18 --minReadLen $minlen 20 --minReadLen $minlen
21 #end if
19 #if str( $param_type.readfilter ) != "": 22 #if str( $param_type.readfilter ) != "":
20 --read-filter $readfilter 23 --read-filter $readfilter
24 #end if
21 #if str( $param_type.region ) != "": 25 #if str( $param_type.region ) != "":
22 --aligned-region $region 26 --aligned-region $region
27 #end if
23 #if $input.input_select=="file": 28 #if $input.input_select=="file":
24 $input.file 29 $input.file
25 #else: 30 #else:
26 $input.accession 31 $input.accession
27 #end if 32 #end if