comparison sra.py @ 16:93a60318b9ca draft

updates to SRA datatype

15:078b8e168b0c

"""
Sra class
"""

import binascii
from galaxy.datatypes.binary import Binary
from galaxy.datatypes.data import Data
from galaxy.datatypes.metadata import MetadataElement
from galaxy.datatypes.sniff import *

class Sra( Binary ):
    """ Sequence Read Archive (SRA) """
    file_ext = 'sra'

    def __init__( self, **kwd ):
        Binary.__init__( self, **kwd )

            dataset.blurb = 'file purged from disk'
    def display_peek(self, dataset):
        try:
            return dataset.peek
        except:
            return 'Binary sra file (%s)' % ( data.nice_size(dataset.get_size()))

16:93a60318b9ca

"""
Sra class
"""
import logging
import binascii
from galaxy.datatypes.data import *
from galaxy.datatypes.sniff import *
from galaxy.datatypes.binary import *
from galaxy.datatypes.metadata import *

log = logging.getLogger(__name__)

class SRA( Binary ):
    """ Sequence Read Archive (SRA) """
    file_ext = 'sra'

    def __init__( self, **kwd ):
        Binary.__init__( self, **kwd )

            dataset.blurb = 'file purged from disk'
    def display_peek(self, dataset):
        try:
            return dataset.peek
        except:
            return 'Binary SRA file (%s)' % ( data.nice_size(dataset.get_size()))

if hasattr(Binary, 'register_sniffable_binary_format'):
    Binary.register_sniffable_binary_format('SRA', 'SRA', SRA)