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comparison sam_dump.xml @ 13:45031bbf6b27 draft

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better sra_fetch code, compliant (?) datatype, updated dependencies in tool wrappers
author Matt Shirley <mdshw5@gmail.com>
date Mon, 17 Jun 2013 16:17:33 -0400
parents cdba74ec9eca
children d850324e82cf
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12:b77840618b8f 13:45031bbf6b27
1 <tool id="sam_dump" name="Extract SAM" version="1.0.0"> 1 <tool id="sam_dump" name="Extract SAM" version="1.0.1">
2 <description> format reads from NCBI SRA.</description> 2 <description> format reads from NCBI SRA.</description>
3 <command>sam-dump $header $aligned $primary '$input' > $output</command> 3 <command>sam-dump $header $aligned $primary '$input' > $output</command>
4 <version_string>sam-dump --version</version_string> 4 <version_string>sam-dump --version</version_string>
5 <inputs> 5 <inputs>
6 <param format="sra" name="input" type="data" label="sra archive"/> 6 <param format="sra" name="input" type="data" label="sra archive"/>