Mercurial > repos > matt-shirley > sra_tools
comparison fastq_dump.xml @ 13:45031bbf6b27 draft
better sra_fetch code, compliant (?) datatype, updated dependencies in tool wrappers
| author | Matt Shirley <mdshw5@gmail.com> |
|---|---|
| date | Mon, 17 Jun 2013 16:17:33 -0400 |
| parents | cdba74ec9eca |
| children | a1255154fa3f |
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| 12:b77840618b8f | 13:45031bbf6b27 |
|---|---|
| 1 <tool id="fastq_dump" name="Extract fastq" version="1.0.0"> | 1 <tool id="fastq_dump" name="Extract fastq" version="1.0.1"> |
| 2 <description> format reads from NCBI SRA.</description> | 2 <description> format reads from NCBI SRA.</description> |
| 3 <command>fastq-dump --log-level fatal --report never --accession '${input.name}' --stdout $split $aligned '$input' > $output </command> | 3 <command>fastq-dump --log-level fatal --report never --accession '${input.name}' --stdout $split $aligned '$input' > $output </command> |
| 4 <version_string>fastq-dump --version</version_string> | 4 <version_string>fastq-dump --version</version_string> |
| 5 <inputs> | 5 <inputs> |
| 6 <param format="sra" name="input" type="data" label="sra archive"/> | 6 <param format="sra" name="input" type="data" label="sra archive"/> |