log

age author description
Mon, 16 Sep 2013 20:27:28 -0400 Matt Shirley update to SRA toolkit 2.3.3-3 draft default tip
Tue, 03 Sep 2013 22:02:30 -0400 Matt Shirley Disable caching, update descriptions, prune deprecated tools. draft
Mon, 05 Aug 2013 12:54:03 -0400 Matt Shirley sea pileup accept text input draft
Mon, 05 Aug 2013 11:43:37 -0400 Matt Shirley syntax error in sam dump text input draft
Mon, 05 Aug 2013 10:53:43 -0400 Matt Shirley conditional output for sam dump draft
Mon, 05 Aug 2013 10:11:15 -0400 Matt Shirley auto datatype for sam dump draft
Mon, 05 Aug 2013 09:55:32 -0400 Matt Shirley add option to take plaintext file with accession on one line draft
Mon, 05 Aug 2013 09:40:26 -0400 Matt Shirley add option to take plaintext file with accession on one line draft
Mon, 05 Aug 2013 08:09:27 -0400 Matt Shirley add fastq output option to sam dump draft
Sun, 04 Aug 2013 23:17:53 -0400 Matt Shirley bring pileup to parity with sam; fixed minMapq for sam draft
Thu, 01 Aug 2013 13:57:27 -0400 Matt Shirley Exposed more options for fastq_dump and sam_dump draft
Sun, 30 Jun 2013 19:50:44 -0400 Matt Shirley variable typos draft
Sun, 30 Jun 2013 19:23:07 -0400 Matt Shirley properly end conditional statements draft
Sun, 30 Jun 2013 19:20:38 -0400 Matt Shirley exposed many more options for fastq-dump draft
Sun, 30 Jun 2013 16:18:09 -0400 Matt Shirley typo in input conditional draft
Sun, 30 Jun 2013 11:27:51 -0400 Matt Shirley debug prefetch caching and accession input for fastq_dump draft
Sun, 30 Jun 2013 11:12:31 -0400 Matt Shirley debug prefetch caching and accession input for fastq_dump draft
Sat, 29 Jun 2013 16:14:32 -0400 Matt Shirley debug prefetch caching and accession input for fastq_dump draft
Sat, 29 Jun 2013 16:01:28 -0400 Matt Shirley debug prefetch caching and accession input for fastq_dump draft
Sat, 29 Jun 2013 15:53:14 -0400 Matt Shirley debug prefetch caching and accession input for fastq_dump draft
Sat, 29 Jun 2013 15:49:44 -0400 Matt Shirley debug prefetch caching and accession input for fastq_dump draft
Sat, 29 Jun 2013 11:14:03 -0400 Matt Shirley implement prefetch caching and accession input for fastq_dump draft
Wed, 19 Jun 2013 16:48:18 -0400 Matt Shirley correct datatype for output draft
Wed, 19 Jun 2013 16:46:16 -0400 Matt Shirley warning for sra_pileup draft
Wed, 19 Jun 2013 16:44:33 -0400 Matt Shirley added vdb-validate tool draft
Wed, 19 Jun 2013 14:11:37 -0400 Matt Shirley more fixes for sra datatype, added sra_pileup draft
Wed, 19 Jun 2013 13:31:58 -0400 Matt Shirley fix datatype reference, increment versions draft
Mon, 17 Jun 2013 21:41:27 -0400 Matt Shirley tweaks to fastq-dump command draft
Mon, 17 Jun 2013 21:28:00 -0400 Matt Shirley revert previous commit draft
Mon, 17 Jun 2013 21:22:17 -0400 Matt Shirley try static build to resolve missing libraries draft
Mon, 17 Jun 2013 20:37:28 -0400 Matt Shirley updates to SRA datatype draft
Mon, 17 Jun 2013 20:30:16 -0400 Matt Shirley updates to SRA datatype draft
Mon, 17 Jun 2013 17:08:53 -0400 Matt Shirley update tool wrapper and increment version draft
Mon, 17 Jun 2013 17:07:57 -0400 Matt Shirley fallback to getopt for fetch_sra.py draft
Mon, 17 Jun 2013 16:17:33 -0400 Matt Shirley better sra_fetch code, compliant (?) datatype, updated dependencies in tool wrappers draft
Mon, 17 Jun 2013 16:05:30 -0400 Matt Shirley debugging SRA datatype draft
Mon, 17 Jun 2013 14:26:40 -0400 Matt Shirley updated sra_toolkit dependency in <requirements> draft
Mon, 17 Jun 2013 14:22:57 -0400 Matt Shirley debugging SRA datatype draft
Mon, 17 Jun 2013 14:07:05 -0400 Matt Shirley debugging automatic SRA build and install draft
Mon, 17 Jun 2013 14:00:25 -0400 Matt Shirley debugging automatic SRA build and install draft
Mon, 17 Jun 2013 13:37:47 -0400 Matt Shirley debugging automatic SRA build and install draft
Mon, 17 Jun 2013 13:16:16 -0400 Matt Shirley debugging automatic SRA build and install draft
Mon, 17 Jun 2013 13:05:59 -0400 Matt Shirley debugging automatic SRA build and install draft
Mon, 17 Jun 2013 12:48:38 -0400 Matt Shirley debugging automatic SRA build and install draft
Sun, 16 Jun 2013 22:07:21 -0400 Matt Shirley Update tool dependencies draft
Wed, 29 May 2013 22:10:26 -0400 Matt Shirley tool dependencies for automated sra_sdk download and compilation draft
Wed, 29 May 2013 22:08:19 -0400 Matt Shirley minor fixes draft
Tue, 27 Nov 2012 13:44:28 -0500 matt-shirley Initial version - still need to test if datatype works correctly, and implement scripted download of SRA binaries. draft