# HG changeset patch # User matt-shirley # Date 1364695391 14400 # Node ID b9e8df2534f96c83589e4117b56fb781a676c38b Uploaded diff -r 000000000000 -r b9e8df2534f9 fixFastq.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fixFastq.xml Sat Mar 30 22:03:11 2013 -0400 @@ -0,0 +1,26 @@ + + generated using Hamming encoding + fixFastq.py $strict $list $fastq $out + + + + + + + + + + + + + + + + hamstring + + + This program accepts a fastqsanger file containing reads that are barcoded on the 5' end using a Hamming7,4 DNA barcode. A list of valid barcodes is checked, + and if the barcode checksum fails the barcode is corrected and checked against this list. If the barcode is not present in the list, it may be replaced + with 'N' to denote ambiguity. + +