comparison fixFastq.xml @ 2:cfe2e583df82 draft

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1:7911d648cf29

  </outputs>
  <stdio>
    <exit_code range="127" level="fatal" description="Cannot find fixFastq.py"/>
  </stdio>
  <requirements>
    <requirement type="python-module">hamstring</requirement>
  </requirements>
  <help>
    This program accepts a fastqsanger file containing reads that are barcoded on the 5' end using a Hamming7,4 DNA barcode. A list of valid barcodes is checked, 
    and if the barcode checksum fails the barcode is corrected and checked against this list. If the barcode is not present in the list, it may be replaced 
    with 'N' to denote ambiguity.

2:cfe2e583df82

  </outputs>
  <stdio>
    <exit_code range="127" level="fatal" description="Cannot find fixFastq.py"/>
  </stdio>
  <requirements>
    <requirement type="package" version="1.0">hamstring</requirement>
  </requirements>
  <help>
    This program accepts a fastqsanger file containing reads that are barcoded on the 5' end using a Hamming7,4 DNA barcode. A list of valid barcodes is checked, 
    and if the barcode checksum fails the barcode is corrected and checked against this list. If the barcode is not present in the list, it may be replaced 
    with 'N' to denote ambiguity.