# HG changeset patch
# User marcoalbuquerque
# Date 1425170141 18000
# Node ID 213289565e12428c72fe5914a4767e90529d4913
# Parent  ab54013c82037b0c3c68366840b28acde3a50433
Uploaded

diff -r ab54013c8203 -r 213289565e12 bam_parallelism_test.xml
--- a/bam_parallelism_test.xml	Sat Feb 28 19:29:43 2015 -0500
+++ b/bam_parallelism_test.xml	Sat Feb 28 19:35:41 2015 -0500
@@ -5,11 +5,7 @@
 	<parallelism method="multi" split_inputs="normal,tumour" split_mode="by_rname" real_split="False" merge_outputs="output"/>
 	<command>
 
-		{
-		samtools view -H $normal;
-		samtools view $normal \$(echo interval.txt) | head -n5;
-		samtools view $tumour \$(echo interval.txt) | head -n5;
-		} | samtools view -bS - > $output;
+		cat interval.txt;
 
 	</command>
 	<inputs>