Mercurial > repos > marcoalbuquerque > bam_parallelism_test

comparison bam_parallelism_test.xml @ 14:5f30cdf6dbcc draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author marcoalbuquerque
date Tue, 03 Mar 2015 13:38:57 -0500
parents 8e718c9905e1
children
comparison
equal deleted inserted replaced
13:8e718c9905e1 14:5f30cdf6dbcc
1 <tool id="bam_parallelism_test" name="BAM Parallelism Test" version="1.0.0"> 1 <tool id="bam_parallelism_test" name="BAM Parallelism Test" version="1.0.0">
2 <description> 2 <description>
3 BAM Parallelism Test 3 BAM Parallelism Test
4 </description> 4 </description>
5 <parallelism method="basic" split_inputs="infile" split_mode="to_size" split_size="1" shared_inputs="" merge_outputs="outfile"></parallelism> 5 <parallelism method="multi" split_inputs="infile" split_mode="to_size" split_size="1" shared_inputs="normal" merge_outputs="outfile"></parallelism>
6 <command> 6 <command>
7 ln -s $normal input.bam; 7 ln -s $normal input.bam;
8 ln -s $normal.metadata.bam_index input.bam.bai; 8 ln -s $normal.metadata.bam_index input.bam.bai;
9 samtools view input.bam \$(cat $infile) | head -n 5 > $outfile; 9 samtools view input.bam \$(cat $infile) | head -n 5 > $outfile;
10 </command> 10 </command>