Mercurial > repos > mahtabm > ensembl
diff variant_effect_predictor/Bio/Tools/Blast/README @ 0:1f6dce3d34e0
Uploaded
author | mahtabm |
---|---|
date | Thu, 11 Apr 2013 02:01:53 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/variant_effect_predictor/Bio/Tools/Blast/README Thu Apr 11 02:01:53 2013 -0400 @@ -0,0 +1,55 @@ + +NOTE NOTE NOTE NOTE + +This modules are no longer supported. Use the Bio::SearchIO system for +your BLAST parsing. + + + +README for the Perl extension Bio::Tools::Blast and related modules +in the Bio/Tools/Blast/ directory of the bioperl distribution. + +$Id: README,v 1.5 2002/06/19 22:25:15 jason Exp $ + +### Notice: +### +### The Bio::Tools::Blast:: modules are no longer being +### maintained due to support issues. Please take a look +### at the Bio::Tools::BPlite modules and the Bio::SearchIO. +### Questions? Drop an email to the bioperl mailing list at +### bioperl-l@bioperl.org +### + + +The Bioperl Blast module provides an API to the BLAST program, and +thereby permits the parsing, running, HTML-formatting, and general +manipulation of Blast data by simple method calls on Perl objects. +It does not implement the Blast algorithm itself, relying on external +applications for this compute-intensive operation. + +Bio::Tools::Blast.pm is the central "brain" module. It makes use of +other modules in the Bio/Tools/Blast/ directory. Bio::Tools:Blast.pm +is the only module you need to import into your namespace for working +with Blast reports. + +Documentation and usage information about Blast.pm is contained in the +module itself. Run Blast.pm through pod2html (preferably from Perl +v5.004 or later) and view the resulting output with a web +browser. Other modules in the hierarchy are similarly documented but +Blast.pm contains the main documentation. + +On-line docs can be found at http://bio.perl.org/Projects/Blast/ + +Send bug reports using the bioperl bug-tracking system at +http://bio.perl.org/Bugs/ or send them via e-mail to +bioperl-bugs@bio.perl.org. + +Send general comments, questions, and feature requests to the bioperl +mailing lists: + + bioperl-l@bioperl.org (discussion) + +Have a Blast! + +Steve Chervitz +sac@neomorphic.com