diff variant_effect_predictor/Bio/Tools/Blast/README @ 0:1f6dce3d34e0

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author mahtabm
date Thu, 11 Apr 2013 02:01:53 -0400
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+NOTE NOTE NOTE NOTE
+
+This modules are no longer supported.  Use the Bio::SearchIO system for 
+your BLAST parsing.
+
+
+
+README for the Perl extension Bio::Tools::Blast and related modules
+in the Bio/Tools/Blast/ directory of the bioperl distribution.
+
+$Id: README,v 1.5 2002/06/19 22:25:15 jason Exp $
+
+### Notice:
+###
+### The Bio::Tools::Blast:: modules are no longer being
+### maintained due to support issues. Please take a look
+### at the Bio::Tools::BPlite modules and the Bio::SearchIO. 
+### Questions? Drop an email to the bioperl mailing list at 
+### bioperl-l@bioperl.org 
+###  
+
+
+The Bioperl Blast module provides an API to the BLAST program, and
+thereby permits the parsing, running, HTML-formatting, and general
+manipulation of Blast data by simple method calls on Perl objects. 
+It does not implement the Blast algorithm itself, relying on external
+applications for this compute-intensive operation.
+
+Bio::Tools::Blast.pm is the central "brain" module. It makes use of
+other modules in the Bio/Tools/Blast/ directory. Bio::Tools:Blast.pm
+is the only module you need to import into your namespace for working
+with Blast reports.
+
+Documentation and usage information about Blast.pm is contained in the
+module itself. Run Blast.pm through pod2html (preferably from Perl
+v5.004 or later) and view the resulting output with a web
+browser. Other modules in the hierarchy are similarly documented but
+Blast.pm contains the main documentation.
+
+On-line docs can be found at http://bio.perl.org/Projects/Blast/
+
+Send bug reports using the bioperl bug-tracking system at
+http://bio.perl.org/Bugs/ or send them via e-mail to
+bioperl-bugs@bio.perl.org.
+
+Send general comments, questions, and feature requests to the bioperl
+mailing lists:
+
+  bioperl-l@bioperl.org      (discussion)
+
+Have a Blast!
+
+Steve Chervitz
+sac@neomorphic.com