diff variant_effect_predictor/Bio/SeqFeature/Gene/NC_Feature.pm @ 0:1f6dce3d34e0

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/variant_effect_predictor/Bio/SeqFeature/Gene/NC_Feature.pm	Thu Apr 11 02:01:53 2013 -0400
@@ -0,0 +1,118 @@
+# $Id: NC_Feature.pm,v 1.5 2002/10/22 07:45:20 lapp Exp $
+#
+# BioPerl module for Bio::SeqFeature::Gene::NC_Feature.pm
+#
+# Cared for by David Block <[e-mail]>
+#
+# Copyright David Block
+#
+# You may distribute this module under the same terms as perl itself
+
+# POD documentation - main docs before the code
+
+=head1 NAME
+
+Bio::SeqFeature::Gene::NC_Feature.pm - DESCRIPTION of Object
+
+=head1 SYNOPSIS
+
+Give standard usage here
+
+=head1 DESCRIPTION
+
+Describe the object here
+
+=head1 FEEDBACK
+
+=head2 Mailing Lists
+
+User feedback is an integral part of the evolution of this and other
+Bioperl modules. Send your comments and suggestions preferably to
+the Bioperl mailing list.  Your participation is much appreciated.
+
+  [e-mail]              - General discussion
+  http://bioperl.org/MailList.shtml  - About the mailing lists
+
+=head2 Reporting Bugs
+
+Report bugs to the Bioperl bug tracking system to help us keep track
+of the bugs and their resolution. Bug reports can be submitted via
+email or the web:
+
+  [e-mail]
+  http://bugzilla.bioperl.org/
+
+=head1 AUTHOR - David Block
+
+Email [e-mail]
+
+Describe contact details here
+
+=head1 CONTRIBUTORS
+
+Additional contributors names and emails here
+
+=head1 APPENDIX
+
+The rest of the documentation details each of the object methods.
+Internal methods are usually preceded with a _
+
+=cut
+
+
+# Let the code begin...
+
+package Bio::SeqFeature::Gene::NC_Feature;
+use vars qw(@ISA);
+use strict;
+
+# Object preamble - inherits from Bio::Root::Root
+
+use Bio::SeqFeature::Generic;
+
+@ISA = qw(Bio::SeqFeature::Generic);
+sub new {
+  my($class,@args) = @_;
+
+  my $self = $class->SUPER::new(@args);
+}
+
+
+
+=head2 is_coding
+    
+ Title   : is_coding
+ Usage   : if ($feature->is_coding()) {
+                     #do something
+            }
+ Function: Whether or not the feature codes for amino acid.
+ Returns : FALSE
+ Args    : none
+
+
+=cut
+
+sub is_coding {
+   my ($self,@args) = @_;
+   return;
+}
+
+=head2 cds
+
+ Title   : cds
+ Usage   : $cds=$feature->cds();
+ Function: get the coding sequence of this feature
+ Returns : undef
+ Args    : none
+
+
+=cut
+
+sub cds {
+   my ($self,@args) = @_;
+   return;
+
+}
+
+
+1;