diff variant_effect_predictor/Bio/Graphics/Glyph/segmented_keyglyph.pm @ 0:1f6dce3d34e0

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/variant_effect_predictor/Bio/Graphics/Glyph/segmented_keyglyph.pm	Thu Apr 11 02:01:53 2013 -0400
@@ -0,0 +1,91 @@
+package Bio::Graphics::Glyph::segmented_keyglyph;
+
+# $Id: segmented_keyglyph.pm,v 1.5 2002/07/10 01:25:00 lstein Exp $
+# Don't use this package.  It's just for inheriting the segmented glyph in the panel key.
+
+use strict;
+use Bio::Graphics::Glyph::generic;
+use vars '@ISA';
+@ISA = 'Bio::Graphics::Glyph::generic';
+
+sub make_key_feature {
+  my $self = shift;
+  my $scale = 1/$self->scale;  # base pairs/pixel
+  # two segments, at pixels 0->50, 60->80
+  my $offset = $self->panel->offset;
+  my $feature =
+    Bio::Graphics::Feature->new(
+				-segments=>[ [ 0*$scale +$offset,50*$scale+$offset],
+					     [60*$scale+$offset, 80*$scale+$offset]
+					   ],
+				-name => $self->option('key'),
+				-strand => '+1',
+			       );
+}
+
+1;
+
+__END__
+
+=head1 NAME
+
+Bio::Graphics::Glyph::segmented_keyglyph - The "segmented_keyglyph" glyph
+
+=head1 SYNOPSIS
+
+  See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
+
+=head1 DESCRIPTION
+
+This glyph is used internally by Bio::Graphics::Panel as a base calss
+for drawing the keys at the bottom of the panel.  It should not be
+used explicitly.
+
+=head1 BUGS
+
+Please report them.
+
+=head1 SEE ALSO
+
+
+L<Bio::Graphics::Panel>,
+L<Bio::Graphics::Glyph>,
+L<Bio::Graphics::Glyph::arrow>,
+L<Bio::Graphics::Glyph::cds>,
+L<Bio::Graphics::Glyph::crossbox>,
+L<Bio::Graphics::Glyph::diamond>,
+L<Bio::Graphics::Glyph::dna>,
+L<Bio::Graphics::Glyph::dot>,
+L<Bio::Graphics::Glyph::ellipse>,
+L<Bio::Graphics::Glyph::extending_arrow>,
+L<Bio::Graphics::Glyph::generic>,
+L<Bio::Graphics::Glyph::graded_segments>,
+L<Bio::Graphics::Glyph::heterogeneous_segments>,
+L<Bio::Graphics::Glyph::line>,
+L<Bio::Graphics::Glyph::pinsertion>,
+L<Bio::Graphics::Glyph::primers>,
+L<Bio::Graphics::Glyph::rndrect>,
+L<Bio::Graphics::Glyph::segments>,
+L<Bio::Graphics::Glyph::ruler_arrow>,
+L<Bio::Graphics::Glyph::toomany>,
+L<Bio::Graphics::Glyph::transcript>,
+L<Bio::Graphics::Glyph::transcript2>,
+L<Bio::Graphics::Glyph::translation>,
+L<Bio::Graphics::Glyph::triangle>,
+L<Bio::DB::GFF>,
+L<Bio::SeqI>,
+L<Bio::SeqFeatureI>,
+L<Bio::Das>,
+L<GD>
+
+=head1 AUTHOR
+
+Lincoln Stein E<lt>[e-mail]<gt>
+
+Copyright (c) 2001 Cold Spring Harbor Laboratory
+
+This library is free software; you can redistribute it and/or modify
+it under the same terms as Perl itself.  See DISCLAIMER.txt for
+disclaimers of warranty.
+
+=cut