diff variant_effect_predictor/Bio/Factory/LocationFactoryI.pm @ 0:1f6dce3d34e0

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/variant_effect_predictor/Bio/Factory/LocationFactoryI.pm	Thu Apr 11 02:01:53 2013 -0400
@@ -0,0 +1,107 @@
+# $Id: LocationFactoryI.pm,v 1.2 2002/10/22 07:45:14 lapp Exp $
+#
+# BioPerl module for Bio::Factory::LocationFactoryI
+#
+# Cared for by Hilmar Lapp <hlapp at gmx.net>
+#
+# Copyright Hilmar Lapp
+#
+# You may distribute this module under the same terms as perl itself
+
+#
+# (c) Hilmar Lapp, hlapp at gnf.org, 2002.
+# (c) GNF, Genomics Institute of the Novartis Research Foundation, 2002.
+#
+# You may distribute this module under the same terms as perl itself.
+# Refer to the Perl Artistic License (see the license accompanying this
+# software package, or see http://www.perl.com/language/misc/Artistic.html)
+# for the terms under which you may use, modify, and redistribute this module.
+# 
+# THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
+# MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
+#
+
+# POD documentation - main docs before the code
+
+=head1 NAME
+
+Bio::Factory::LocationFactoryI - DESCRIPTION of Interface
+
+=head1 SYNOPSIS
+
+Give standard usage here
+
+=head1 DESCRIPTION
+
+Describe the interface here
+
+=head1 FEEDBACK
+
+=head2 Mailing Lists
+
+User feedback is an integral part of the evolution of this and other
+Bioperl modules. Send your comments and suggestions preferably to
+the Bioperl mailing list.  Your participation is much appreciated.
+
+  [e-mail]              - General discussion
+  http://bioperl.org/MailList.shtml  - About the mailing lists
+
+=head2 Reporting Bugs
+
+Report bugs to the Bioperl bug tracking system to help us keep track
+of the bugs and their resolution. Bug reports can be submitted via
+email or the web:
+
+  [e-mail]
+  http://bugzilla.bioperl.org/
+
+=head1 AUTHOR - Hilmar Lapp
+
+Email hlapp at gmx.net
+
+=head1 CONTRIBUTORS
+
+Additional contributors names and emails here
+
+=head1 APPENDIX
+
+The rest of the documentation details each of the object methods.
+Internal methods are usually preceded with a _
+
+=cut
+
+
+# Let the code begin...
+
+
+package Bio::Factory::LocationFactoryI;
+use vars qw(@ISA);
+use strict;
+use Carp;
+use Bio::Root::RootI;
+
+@ISA = qw( Bio::Root::RootI );
+
+=head2 from_string
+
+ Title   : from_string
+ Usage   : $loc = $locfactory->from_string("100..200");
+ Function: Parses the given string and returns a Bio::LocationI implementing
+           object representing the location encoded by the string.
+
+           Different implementations may support different encodings. An
+           example of a commonly used encoding is the Genbank feature table
+           encoding of locations.
+ Example :
+ Returns : A Bio::LocationI implementing object.
+ Args    : A string.
+
+
+=cut
+
+sub from_string{
+    my ($self,@args) = @_;
+
+    $self->throw_not_implemented();
+}