diff variant_effect_predictor/Bio/EnsEMBL/DBSQL/OntologyDBAdaptor.pm @ 0:1f6dce3d34e0

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/variant_effect_predictor/Bio/EnsEMBL/DBSQL/OntologyDBAdaptor.pm	Thu Apr 11 02:01:53 2013 -0400
@@ -0,0 +1,48 @@
+=head1 LICENSE
+
+  Copyright (c) 1999-2012 The European Bioinformatics Institute and
+  Genome Research Limited.  All rights reserved.
+
+  This software is distributed under a modified Apache license.
+  For license details, please see
+
+    http://www.ensembl.org/info/about/code_licence.html
+
+=head1 CONTACT
+
+  Please email comments or questions to the public Ensembl
+  developers list at <[e-mail]>.
+
+  Questions may also be sent to the Ensembl help desk at
+  <[e-mail]>.
+
+=cut
+
+=head1 NAME
+
+Bio::EnsEMBL::DBSQL::OntologyDBAdaptor
+
+=head1 DESCRIPTION
+
+Database adaptor for the ontology database ensembl_ontology_NN.
+Mostly inheriting from Bio::EnsEMBL::DBSQL::DBAdaptor, overriding its
+get_available_adaptors() method.  Not doing very much else at this
+moment.
+
+=cut
+
+package Bio::EnsEMBL::DBSQL::OntologyDBAdaptor;
+
+use strict;
+use warnings;
+
+use base qw ( Bio::EnsEMBL::DBSQL::DBAdaptor );
+
+sub get_available_adaptors {
+  return {
+    'GOTerm' => 'Bio::EnsEMBL::DBSQL::OntologyTermAdaptor',  #deprecated
+    'SOTerm' => 'Bio::EnsEMBL::DBSQL::OntologyTermAdaptor',  #deprecated
+    'OntologyTerm' => 'Bio::EnsEMBL::DBSQL::OntologyTermAdaptor' };
+}
+
+1;