diff variant_effect_predictor/Bio/Biblio/MedlineBookArticle.pm @ 0:1f6dce3d34e0

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/variant_effect_predictor/Bio/Biblio/MedlineBookArticle.pm	Thu Apr 11 02:01:53 2013 -0400
@@ -0,0 +1,143 @@
+# $Id: MedlineBookArticle.pm,v 1.3 2002/10/22 07:45:11 lapp Exp $
+#
+# BioPerl module for Bio::Biblio::MedlineBookArticle
+#
+# Cared for by Martin Senger <[e-mail]>
+# For copyright and disclaimer see below.
+
+# POD documentation - main docs before the code
+
+=head1 NAME
+
+Bio::Biblio::MedlineBookArticle - Representation of a MEDLINE book article
+
+=head1 SYNOPSIS
+
+    $obj = new Bio::Biblio::MedlineBookArticle
+                  (-title => 'Getting started'.
+		   -book => new Bio::Biblio::MedlineBook);
+ --- OR ---
+
+    $obj = new Bio::Biblio::MedlineBookArticle;
+    $obj->title ('Getting started');
+
+=head1 DESCRIPTION
+
+A storage object for a MEDLINE book.
+See its place in the class hierarchy in
+http://industry.ebi.ac.uk/openBQS/images/bibobjects_perl.gif
+
+=head2 Attributes
+
+The following attributes are specific to this class
+(however, you can also set and get all attributes defined in the parent classes):
+
+  book           type: Bio::Biblio::MedlineBook
+
+=head1 SEE ALSO
+
+=over
+
+=item *
+
+OpenBQS home page: http://industry.ebi.ac.uk/openBQS
+
+=item *
+
+Comments to the Perl client: http://industry.ebi.ac.uk/openBQS/Client_perl.html
+
+=back
+
+=head1 FEEDBACK
+
+=head2 Mailing Lists
+
+User feedback is an integral part of the evolution of this and other
+Bioperl modules. Send your comments and suggestions preferably to
+the Bioperl mailing list.  Your participation is much appreciated.
+
+  [e-mail]              - General discussion
+  http://bioperl.org/MailList.shtml  - About the mailing lists
+
+=head2 Reporting Bugs
+
+Report bugs to the Bioperl bug tracking system to help us keep track
+of the bugs and their resolution. Bug reports can be submitted via
+email or the web:
+
+  [e-mail]
+  http://bugzilla.bioperl.org/
+
+=head1 AUTHORS
+
+Heikki Lehvaslaiho ([e-mail]),
+Martin Senger ([e-mail])
+
+=head1 COPYRIGHT
+
+Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
+
+This module is free software; you can redistribute it and/or modify
+it under the same terms as Perl itself.
+
+=head1 DISCLAIMER
+
+This software is provided "as is" without warranty of any kind.
+
+=cut
+
+
+# Let the code begin...
+
+
+package Bio::Biblio::MedlineBookArticle;
+use strict;
+use vars qw(@ISA);
+
+use Bio::Biblio::BookArticle;
+use Bio::Biblio::MedlineArticle;
+
+@ISA = qw(Bio::Biblio::BookArticle Bio::Biblio::MedlineArticle);
+
+#
+# a closure with a list of allowed attribute names (these names
+# correspond with the allowed 'get' and 'set' methods); each name also
+# keep what type the attribute should be (use 'undef' if it is a
+# simple scalar)
+#
+{
+    my %_allowed =
+	(
+	 _book => 'Bio::Biblio::MedlineBook',
+	 );
+
+    # return 1 if $attr is allowed to be set/get in this class
+    sub _accessible {
+	my ($self, $attr) = @_;
+	exists $_allowed{$attr} or $self->SUPER::_accessible ($attr);
+	return 1 if exists $_allowed{$attr};
+        foreach my $parent (@ISA) {
+	    return 1 if $parent->_accessible ($attr);
+	}
+    }
+
+    # return an expected type of given $attr
+    # return an expected type of given $attr
+    sub _attr_type {
+	my ($self, $attr) = @_;
+	if (exists $_allowed{$attr}) {
+	    return $_allowed{$attr};
+	} else {
+	    foreach my $parent (@ISA) {
+		if ($parent->_accessible ($attr)) {
+		    return $parent->_attr_type ($attr);
+		}
+	    }
+	}
+	return 'unknown';
+    }
+}
+
+
+1;
+__END__