Mercurial > repos > mahtabm > ensembl
comparison variant_effect_predictor/Bio/Event/EventHandlerI.pm @ 0:1f6dce3d34e0
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| author | mahtabm |
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| date | Thu, 11 Apr 2013 02:01:53 -0400 |
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| -1:000000000000 | 0:1f6dce3d34e0 |
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| 1 # $Id: EventHandlerI.pm,v 1.5 2002/10/22 07:45:14 lapp Exp $ | |
| 2 # | |
| 3 # BioPerl module for Bio::Event::EventHandlerI | |
| 4 # | |
| 5 # Cared for by Jason Stajich <jason@bioperl.org> | |
| 6 # | |
| 7 # Copyright Jason Stajich | |
| 8 # | |
| 9 # You may distribute this module under the same terms as perl itself | |
| 10 | |
| 11 # POD documentation - main docs before the code | |
| 12 | |
| 13 =head1 NAME | |
| 14 | |
| 15 Bio::Event::EventHandlerI - An Event Handler Interface | |
| 16 | |
| 17 =head1 SYNOPSIS | |
| 18 | |
| 19 # do not use this module directly | |
| 20 # See Bio::SearchIO::SearchResultEventHandler for an example of | |
| 21 # implementation. | |
| 22 | |
| 23 =head1 DESCRIPTION | |
| 24 | |
| 25 This interface describes the basic methods required for a | |
| 26 EventHandlers. These are essentially SAX methods. | |
| 27 | |
| 28 =head1 FEEDBACK | |
| 29 | |
| 30 =head2 Mailing Lists | |
| 31 | |
| 32 User feedback is an integral part of the evolution of this and other | |
| 33 Bioperl modules. Send your comments and suggestions preferably to | |
| 34 the Bioperl mailing list. Your participation is much appreciated. | |
| 35 | |
| 36 bioperl-l@bioperl.org - General discussion | |
| 37 http://bioperl.org/MailList.shtml - About the mailing lists | |
| 38 | |
| 39 =head2 Reporting Bugs | |
| 40 | |
| 41 Report bugs to the Bioperl bug tracking system to help us keep track | |
| 42 of the bugs and their resolution. Bug reports can be submitted via | |
| 43 email or the web: | |
| 44 | |
| 45 bioperl-bugs@bioperl.org | |
| 46 http://bugzilla.bioperl.org/ | |
| 47 | |
| 48 =head1 AUTHOR - Jason Stajich | |
| 49 | |
| 50 Email jason@bioperl.org | |
| 51 | |
| 52 Describe contact details here | |
| 53 | |
| 54 =head1 CONTRIBUTORS | |
| 55 | |
| 56 Additional contributors names and emails here | |
| 57 | |
| 58 =head1 APPENDIX | |
| 59 | |
| 60 The rest of the documentation details each of the object methods. | |
| 61 Internal methods are usually preceded with a _ | |
| 62 | |
| 63 =cut | |
| 64 | |
| 65 | |
| 66 # Let the code begin... | |
| 67 | |
| 68 | |
| 69 package Bio::Event::EventHandlerI; | |
| 70 use vars qw(@ISA); | |
| 71 use strict; | |
| 72 use Bio::Root::RootI; | |
| 73 use Carp; | |
| 74 | |
| 75 @ISA = qw(Bio::Root::RootI); | |
| 76 | |
| 77 =head2 will_handle | |
| 78 | |
| 79 Title : will_handle | |
| 80 Usage : if( $handler->will_handle($event_type) ) { ... } | |
| 81 Function: Tests if this event builder knows how to process a specific event | |
| 82 Returns : boolean | |
| 83 Args : event type name | |
| 84 | |
| 85 | |
| 86 =cut | |
| 87 | |
| 88 sub will_handle{ | |
| 89 my ($self,$type) = @_; | |
| 90 $self->throw_not_implemented(); | |
| 91 } | |
| 92 | |
| 93 =head2 SAX methods | |
| 94 | |
| 95 =cut | |
| 96 | |
| 97 =head2 start_document | |
| 98 | |
| 99 Title : start_document | |
| 100 Usage : $eventgenerator->start_document(); | |
| 101 Function: Handle a start document event | |
| 102 Returns : none | |
| 103 Args : none | |
| 104 | |
| 105 | |
| 106 =cut | |
| 107 | |
| 108 sub start_document{ | |
| 109 my ($self,@args) = @_; | |
| 110 $self->throw_not_implemented; | |
| 111 } | |
| 112 | |
| 113 =head2 end_document | |
| 114 | |
| 115 Title : end_document | |
| 116 Usage : $eventgenerator->end_document(); | |
| 117 Function: Handle an end document event | |
| 118 Returns : none | |
| 119 Args : none | |
| 120 | |
| 121 | |
| 122 =cut | |
| 123 | |
| 124 sub end_document{ | |
| 125 my ($self,@args) = @_; | |
| 126 $self->throw_not_implemented; | |
| 127 } | |
| 128 | |
| 129 =head2 start_element | |
| 130 | |
| 131 Title : start_element | |
| 132 Usage : $eventgenerator->start_element | |
| 133 Function: Handles a start element event | |
| 134 Returns : none | |
| 135 Args : hashref with at least 2 keys 'Data' and 'Name' | |
| 136 | |
| 137 | |
| 138 =cut | |
| 139 | |
| 140 sub start_element{ | |
| 141 my ($self,@args) = @_; | |
| 142 $self->throw_not_implemented; | |
| 143 } | |
| 144 | |
| 145 =head2 end_element | |
| 146 | |
| 147 Title : start_element | |
| 148 Usage : $eventgenerator->end_element | |
| 149 Function: Handles an end element event | |
| 150 Returns : none | |
| 151 Args : hashref with at least 2 keys 'Data' and 'Name' | |
| 152 | |
| 153 | |
| 154 =cut | |
| 155 | |
| 156 sub end_element{ | |
| 157 my ($self,@args) = @_; | |
| 158 $self->throw_not_implemented; | |
| 159 } | |
| 160 | |
| 161 | |
| 162 =head2 in_element | |
| 163 | |
| 164 Title : in_element | |
| 165 Usage : if( $eventgenerator->in_element($element) ) {} | |
| 166 Function: Test if we are in a particular element | |
| 167 This is different than 'within' because 'in' tests only | |
| 168 if one has reached a specific element. | |
| 169 Returns : boolean | |
| 170 Args : string element name | |
| 171 | |
| 172 | |
| 173 =cut | |
| 174 | |
| 175 sub in_element{ | |
| 176 my ($self,@args) = @_; | |
| 177 $self->throw_not_implemented; | |
| 178 | |
| 179 } | |
| 180 | |
| 181 =head2 within_element | |
| 182 | |
| 183 Title : within_element | |
| 184 Usage : if( $eventgenerator->within_element($element) ) {} | |
| 185 Function: Test if we are within a particular element | |
| 186 This is different than 'in' because within can be tested | |
| 187 for a whole block. | |
| 188 Returns : boolean | |
| 189 Args : string element name | |
| 190 | |
| 191 | |
| 192 =cut | |
| 193 | |
| 194 sub within_element{ | |
| 195 my ($self,@args) = @_; | |
| 196 $self->throw_not_implemented; | |
| 197 } | |
| 198 | |
| 199 =head2 characters | |
| 200 | |
| 201 Title : characters | |
| 202 Usage : $eventgenerator->characters($str) | |
| 203 Function: Send a character events | |
| 204 Returns : none | |
| 205 Args : string | |
| 206 | |
| 207 | |
| 208 =cut | |
| 209 | |
| 210 sub characters{ | |
| 211 my ($self,@args) = @_; | |
| 212 $self->throw_not_implemented; | |
| 213 } | |
| 214 | |
| 215 1; |
