Mercurial > repos > mahtabm > ensembl
comparison variant_effect_predictor/Bio/DescribableI.pm @ 0:1f6dce3d34e0
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author | mahtabm |
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date | Thu, 11 Apr 2013 02:01:53 -0400 |
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-1:000000000000 | 0:1f6dce3d34e0 |
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1 # $Id: DescribableI.pm,v 1.6 2002/10/25 01:29:37 lapp Exp $ | |
2 | |
3 # | |
4 # This module is licensed under the same terms as Perl itself. You use, | |
5 # modify, and redistribute it under the terms of the Perl Artistic License. | |
6 # | |
7 | |
8 =head1 NAME | |
9 | |
10 Bio::DescribableI - interface for objects with human readable names and descriptions | |
11 | |
12 =head1 SYNOPSIS | |
13 | |
14 | |
15 # to test this is a describable object | |
16 | |
17 $obj->isa("Bio::DescribableI") || | |
18 $obj->throw("$obj does not implement the Bio::DescribableI interface"); | |
19 | |
20 # accessors | |
21 | |
22 $name = $obj->display_name(); | |
23 $desc = $obj->description(); | |
24 | |
25 | |
26 | |
27 =head1 DESCRIPTION | |
28 | |
29 This interface describes methods expected on describable objects, ie | |
30 ones which have human displayable names and descriptions | |
31 | |
32 =head1 FEEDBACK | |
33 | |
34 =head2 Mailing Lists | |
35 | |
36 User feedback is an integral part of the evolution of this and other | |
37 Bioperl modules. Send your comments and suggestions preferably to one | |
38 of the Bioperl mailing lists. Your participation is much appreciated. | |
39 | |
40 bioperl-l@bioperl.org - General discussion | |
41 http://bio.perl.org/MailList.html - About the mailing lists | |
42 | |
43 =head2 Reporting Bugs | |
44 | |
45 Report bugs to the Bioperl bug tracking system to help us keep track | |
46 the bugs and their resolution. Bug reports can be submitted via email | |
47 or the web: | |
48 | |
49 bioperl-bugs@bio.perl.org | |
50 http://bugzilla.bioperl.org/ | |
51 | |
52 =head1 AUTHOR - Ewan Birney | |
53 | |
54 Email birney@sanger.ac.uk | |
55 | |
56 =cut | |
57 | |
58 package Bio::DescribableI; | |
59 use vars qw(@ISA ); | |
60 use strict; | |
61 use Bio::Root::RootI; | |
62 | |
63 | |
64 @ISA = qw(Bio::Root::RootI); | |
65 | |
66 =head1 Implementation Specific Functions | |
67 | |
68 These functions are the ones that a specific implementation must | |
69 define. | |
70 | |
71 =head2 display_name | |
72 | |
73 Title : display_name | |
74 Usage : $string = $obj->display_name() | |
75 Function: A string which is what should be displayed to the user | |
76 the string should have no spaces (ideally, though a cautious | |
77 user of this interface would not assumme this) and should be | |
78 less than thirty characters (though again, double checking | |
79 this is a good idea) | |
80 Returns : A scalar | |
81 Status : Virtual | |
82 | |
83 =cut | |
84 | |
85 sub display_name { | |
86 my ($self) = @_; | |
87 $self->throw_not_implemented(); | |
88 } | |
89 | |
90 | |
91 =head2 description | |
92 | |
93 Title : description | |
94 Usage : $string = $obj->description() | |
95 Function: A text string suitable for displaying to the user a | |
96 description. This string is likely to have spaces, but | |
97 should not have any newlines or formatting - just plain | |
98 text. The string should not be greater than 255 characters | |
99 and clients can feel justified at truncating strings at 255 | |
100 characters for the purposes of display | |
101 Returns : A scalar | |
102 Status : Virtual | |
103 | |
104 =cut | |
105 | |
106 sub description { | |
107 my ($self) = @_; | |
108 $self->throw_not_implemented(); | |
109 } | |
110 | |
111 1; |