Mercurial > repos > mahtabm > ensembl
comparison variant_effect_predictor/Bio/DB/XEMBLService.pm @ 0:1f6dce3d34e0
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author | mahtabm |
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date | Thu, 11 Apr 2013 02:01:53 -0400 |
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-1:000000000000 | 0:1f6dce3d34e0 |
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1 # | |
2 # $Id: XEMBLService.pm,v 1.3 2002/10/22 07:38:29 lapp Exp $ | |
3 # | |
4 # BioPerl module for Bio::DB::XEMBLService | |
5 # | |
6 # Cared for by Lincoln Stein <lstein@cshl.org> | |
7 # | |
8 # Copyright Lincoln Stein | |
9 # | |
10 # You may distribute this module under the same terms as perl itself | |
11 | |
12 # POD documentation - main docs before the code | |
13 | |
14 =head1 NAME | |
15 | |
16 Bio::DB::XEMBLService - SOAP service definition for XEMBL | |
17 | |
18 =head1 SYNOPSIS | |
19 | |
20 #usage | |
21 | |
22 =head1 DESCRIPTION | |
23 | |
24 SOAP service definition for XEMBL. | |
25 | |
26 =head1 FEEDBACK | |
27 | |
28 =head2 Mailing Lists | |
29 | |
30 User feedback is an integral part of the evolution of this and other | |
31 Bioperl modules. Send your comments and suggestions preferably to one | |
32 of the Bioperl mailing lists. Your participation is much appreciated. | |
33 | |
34 bioperl-l@bioperl.org - General discussion | |
35 http://bio.perl.org/MailList.html - About the mailing lists | |
36 | |
37 =head2 Reporting Bugs | |
38 | |
39 Report bugs to the Bioperl bug tracking system to help us keep track | |
40 the bugs and their resolution. | |
41 Bug reports can be submitted via email or the web: | |
42 | |
43 bioperl-bugs@bio.perl.org | |
44 http://bugzilla.bioperl.org/ | |
45 | |
46 =head1 AUTHOR - Lincoln Stein | |
47 | |
48 Email lstein@cshl.org | |
49 | |
50 =head1 APPENDIX | |
51 | |
52 The rest of the documentation details each of the object | |
53 methods. Internal methods are usually preceded with a _ | |
54 | |
55 =cut | |
56 | |
57 | |
58 | |
59 package Bio::DB::XEMBLService; | |
60 | |
61 # -- generated by SOAP::Lite (v0.51) for Perl -- soaplite.com -- Copyright (C) 2000-2001 Paul Kulchenko -- | |
62 # -- generated from http://www.ebi.ac.uk/xembl/XEMBL.wsdl [Sat Jan 26 14:47:29 2002] | |
63 | |
64 my %methods = ( | |
65 getNucSeq => { | |
66 endpoint => 'http://www.ebi.ac.uk:80/cgi-bin/xembl/XEMBL-SOAP.pl', | |
67 soapaction => 'http://www.ebi.ac.uk/XEMBL#getNucSeq', | |
68 uri => 'http://www.ebi.ac.uk/XEMBL', | |
69 parameters => [ | |
70 SOAP::Data->new(name => 'format', type => 'xsd:string', attr => {}), | |
71 SOAP::Data->new(name => 'ids', type => 'xsd:string', attr => {}), | |
72 ], | |
73 }, | |
74 ); | |
75 | |
76 use SOAP::Lite; | |
77 use Exporter; | |
78 use Carp (); | |
79 | |
80 use vars qw(@ISA $AUTOLOAD @EXPORT_OK %EXPORT_TAGS); | |
81 @ISA = qw(Exporter SOAP::Lite); | |
82 @EXPORT_OK = (keys %methods); | |
83 %EXPORT_TAGS = ('all' => [@EXPORT_OK]); | |
84 | |
85 no strict 'refs'; | |
86 for my $method (@EXPORT_OK) { | |
87 my %method = %{$methods{$method}}; | |
88 *$method = sub { | |
89 my $self = UNIVERSAL::isa($_[0] => __PACKAGE__) | |
90 ? ref $_[0] ? shift # OBJECT | |
91 # CLASS, either get self or create new and assign to self | |
92 : (shift->self || __PACKAGE__->self(__PACKAGE__->new)) | |
93 # function call, either get self or create new and assign to self | |
94 : (__PACKAGE__->self || __PACKAGE__->self(__PACKAGE__->new)); | |
95 $self->proxy($method{endpoint} || Carp::croak "No server address (proxy) specified") unless $self->proxy; | |
96 my @templates = @{$method{parameters}}; | |
97 my $som = $self | |
98 -> endpoint($method{endpoint}) | |
99 -> uri($method{uri}) | |
100 -> on_action(sub{qq!"$method{soapaction}"!}) | |
101 -> call($method => map {shift(@templates)->value($_)} @_); | |
102 UNIVERSAL::isa($som => 'SOAP::SOM') ? wantarray ? $som->paramsall : $som->result | |
103 : $som; | |
104 } | |
105 } | |
106 | |
107 1; |