comparison variant_effect_predictor/Bio/Biblio/Organisation.pm @ 0:1f6dce3d34e0

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date Thu, 11 Apr 2013 02:01:53 -0400
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1 # $Id: Organisation.pm,v 1.7 2002/10/22 07:45:11 lapp Exp $
2 #
3 # BioPerl module for Bio::Biblio::Organisation
4 #
5 # Cared for by Martin Senger <senger@ebi.ac.uk>
6 # For copyright and disclaimer see below.
7
8 # POD documentation - main docs before the code
9
10 =head1 NAME
11
12 Bio::Biblio::Organisation - Representation of an organisation
13
14 =head1 SYNOPSIS
15
16 $obj = new Bio::Biblio::Organisation (-name => 'O\'Reilly');
17
18 --- OR ---
19
20 $obj = new Bio::Biblio::Organisation;
21 $obj->name ('O\'Reilly');
22
23 =head1 DESCRIPTION
24
25 A storage object for an organisation related to a bibliographic resource.
26
27 =head2 Attributes
28
29 The following attributes are specific to this class
30 (however, you can also set and get all attributes defined in the parent classes):
31
32 name
33
34 =head1 SEE ALSO
35
36 =over
37
38 =item *
39
40 OpenBQS home page: http://industry.ebi.ac.uk/openBQS
41
42 =item *
43
44 Comments to the Perl client: http://industry.ebi.ac.uk/openBQS/Client_perl.html
45
46 =back
47
48 =head1 FEEDBACK
49
50 =head2 Mailing Lists
51
52 User feedback is an integral part of the evolution of this and other
53 Bioperl modules. Send your comments and suggestions preferably to
54 the Bioperl mailing list. Your participation is much appreciated.
55
56 bioperl-l@bioperl.org - General discussion
57 http://bioperl.org/MailList.shtml - About the mailing lists
58
59 =head2 Reporting Bugs
60
61 Report bugs to the Bioperl bug tracking system to help us keep track
62 of the bugs and their resolution. Bug reports can be submitted via
63 email or the web:
64
65 bioperl-bugs@bioperl.org
66 http://bugzilla.bioperl.org/
67
68 =head1 AUTHORS
69
70 Heikki Lehvaslaiho (heikki@ebi.ac.uk),
71 Martin Senger (senger@ebi.ac.uk)
72
73 =head1 COPYRIGHT
74
75 Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
76
77 This module is free software; you can redistribute it and/or modify
78 it under the same terms as Perl itself.
79
80 =head1 DISCLAIMER
81
82 This software is provided "as is" without warranty of any kind.
83
84 =cut
85
86
87 # Let the code begin...
88
89
90 package Bio::Biblio::Organisation;
91 use strict;
92 use vars qw(@ISA);
93
94 use Bio::Biblio::Provider;
95
96 @ISA = qw(Bio::Biblio::Provider);
97
98 #
99 # a closure with a list of allowed attribute names (these names
100 # correspond with the allowed 'get' and 'set' methods); each name also
101 # keep what type the attribute should be (use 'undef' if it is a
102 # simple scalar)
103 #
104 {
105 my %_allowed =
106 (
107 _name => undef,
108 );
109
110 # return 1 if $attr is allowed to be set/get in this class
111 sub _accessible {
112 my ($self, $attr) = @_;
113 exists $_allowed{$attr} or $self->SUPER::_accessible ($attr);
114 }
115
116 # return an expected type of given $attr
117 sub _attr_type {
118 my ($self, $attr) = @_;
119 if (exists $_allowed{$attr}) {
120 return $_allowed{$attr};
121 } else {
122 return $self->SUPER::_attr_type ($attr);
123 }
124 }
125 }
126
127
128 1;
129 __END__