comparison variant_effect_predictor/Bio/Biblio/BookArticle.pm @ 0:1f6dce3d34e0

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author mahtabm
date Thu, 11 Apr 2013 02:01:53 -0400
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1 # $Id: BookArticle.pm,v 1.6 2002/10/22 07:45:11 lapp Exp $
2 #
3 # BioPerl module for Bio::Biblio::BookArticle
4 #
5 # Cared for by Martin Senger <senger@ebi.ac.uk>
6 # For copyright and disclaimer see below.
7
8 # POD documentation - main docs before the code
9
10 =head1 NAME
11
12 Bio::Biblio::BookArticle - Representation of a book article
13
14 =head1 SYNOPSIS
15
16 $obj = new Bio::Biblio::BookArticle (-identifier => '123abc',
17 -book => new Bio::Biblio::Book);
18 --- OR ---
19
20 $obj = new Bio::Biblio::BookArticle;
21 $obj->book (new Bio::Biblio::Book);
22
23
24 =head1 DESCRIPTION
25
26 A storage object for a book article.
27 See its place in the class hierarchy in
28 http://industry.ebi.ac.uk/openBQS/images/bibobjects_perl.gif
29
30 =head2 Attributes
31
32 The following attributes are specific to this class
33 (however, you can also set and get all attributes defined in the parent classes):
34
35 book type: Bio::Biblio::Book
36
37 =head1 SEE ALSO
38
39 =over
40
41 =item *
42
43 OpenBQS home page: http://industry.ebi.ac.uk/openBQS
44
45 =item *
46
47 Comments to the Perl client: http://industry.ebi.ac.uk/openBQS/Client_perl.html
48
49 =back
50
51 =head1 FEEDBACK
52
53 =head2 Mailing Lists
54
55 User feedback is an integral part of the evolution of this and other
56 Bioperl modules. Send your comments and suggestions preferably to
57 the Bioperl mailing list. Your participation is much appreciated.
58
59 bioperl-l@bioperl.org - General discussion
60 http://bioperl.org/MailList.shtml - About the mailing lists
61
62 =head2 Reporting Bugs
63
64 Report bugs to the Bioperl bug tracking system to help us keep track
65 of the bugs and their resolution. Bug reports can be submitted via
66 email or the web:
67
68 bioperl-bugs@bioperl.org
69 http://bugzilla.bioperl.org/
70
71 =head1 AUTHORS
72
73 Heikki Lehvaslaiho (heikki@ebi.ac.uk),
74 Martin Senger (senger@ebi.ac.uk)
75
76 =head1 COPYRIGHT
77
78 Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
79
80 This module is free software; you can redistribute it and/or modify
81 it under the same terms as Perl itself.
82
83 =head1 DISCLAIMER
84
85 This software is provided "as is" without warranty of any kind.
86
87 =cut
88
89
90 # Let the code begin...
91
92
93 package Bio::Biblio::BookArticle;
94 use strict;
95 use vars qw(@ISA);
96
97 use Bio::Biblio::Article;
98
99 @ISA = qw(Bio::Biblio::Article);
100
101 #
102 # a closure with a list of allowed attribute names (these names
103 # correspond with the allowed 'get' and 'set' methods); each name also
104 # keep what type the attribute should be (use 'undef' if it is a
105 # simple scalar)
106 #
107 {
108 my %_allowed =
109 (
110 _book => 'Bio::Biblio::Book',
111 );
112
113 # return 1 if $attr is allowed to be set/get in this class
114 sub _accessible {
115 my ($self, $attr) = @_;
116 exists $_allowed{$attr} or $self->SUPER::_accessible ($attr);
117 }
118
119 # return an expected type of given $attr
120 sub _attr_type {
121 my ($self, $attr) = @_;
122 if (exists $_allowed{$attr}) {
123 return $_allowed{$attr};
124 } else {
125 return $self->SUPER::_attr_type ($attr);
126 }
127 }
128 }
129
130
131 1;
132 __END__