Mercurial > repos > mahtabm > ensembl
comparison variant_effect_predictor/Bio/Biblio/Article.pm @ 0:1f6dce3d34e0
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author | mahtabm |
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date | Thu, 11 Apr 2013 02:01:53 -0400 |
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1 # $Id: Article.pm,v 1.7 2002/10/22 07:45:11 lapp Exp $ | |
2 # | |
3 # BioPerl module for Bio::Biblio::Article | |
4 # | |
5 # Cared for by Martin Senger <senger@ebi.ac.uk> | |
6 # For copyright and disclaimer see below. | |
7 | |
8 # POD documentation - main docs before the code | |
9 | |
10 =head1 NAME | |
11 | |
12 Bio::Biblio::Article - Representation of a general article | |
13 | |
14 =head1 SYNOPSIS | |
15 | |
16 $obj = new Bio::Biblio::Article (-identifier => '123abc', | |
17 -first_page => 23, | |
18 -last_page => 68); | |
19 --- OR --- | |
20 | |
21 $obj = new Bio::Biblio::Article; | |
22 $obj->identifier ('123abc'); | |
23 $obj->first_page (23); | |
24 $obj->last_page (68); | |
25 | |
26 =head1 DESCRIPTION | |
27 | |
28 A storage object for a general article. | |
29 See its place in the class hierarchy in | |
30 http://industry.ebi.ac.uk/openBQS/images/bibobjects_perl.gif | |
31 | |
32 =head2 Attributes | |
33 | |
34 The following attributes are specific to this class | |
35 (however, you can also set and get all attributes defined in the parent classes): | |
36 | |
37 first_page | |
38 last_page | |
39 | |
40 | |
41 =head1 SEE ALSO | |
42 | |
43 =over | |
44 | |
45 =item * | |
46 | |
47 OpenBQS home page: http://industry.ebi.ac.uk/openBQS | |
48 | |
49 =item * | |
50 | |
51 Comments to the Perl client: http://industry.ebi.ac.uk/openBQS/Client_perl.html | |
52 | |
53 =back | |
54 | |
55 =head1 FEEDBACK | |
56 | |
57 =head2 Mailing Lists | |
58 | |
59 User feedback is an integral part of the evolution of this and other | |
60 Bioperl modules. Send your comments and suggestions preferably to | |
61 the Bioperl mailing list. Your participation is much appreciated. | |
62 | |
63 bioperl-l@bioperl.org - General discussion | |
64 http://bioperl.org/MailList.shtml - About the mailing lists | |
65 | |
66 =head2 Reporting Bugs | |
67 | |
68 Report bugs to the Bioperl bug tracking system to help us keep track | |
69 of the bugs and their resolution. Bug reports can be submitted via | |
70 email or the web: | |
71 | |
72 bioperl-bugs@bioperl.org | |
73 http://bugzilla.bioperl.org/ | |
74 | |
75 =head1 AUTHORS | |
76 | |
77 Heikki Lehvaslaiho (heikki@ebi.ac.uk), | |
78 Martin Senger (senger@ebi.ac.uk) | |
79 | |
80 =head1 COPYRIGHT | |
81 | |
82 Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved. | |
83 | |
84 This module is free software; you can redistribute it and/or modify | |
85 it under the same terms as Perl itself. | |
86 | |
87 =head1 DISCLAIMER | |
88 | |
89 This software is provided "as is" without warranty of any kind. | |
90 | |
91 =cut | |
92 | |
93 | |
94 # Let the code begin... | |
95 | |
96 | |
97 package Bio::Biblio::Article; | |
98 use strict; | |
99 use vars qw(@ISA); | |
100 | |
101 use Bio::Biblio::Ref; | |
102 | |
103 @ISA = qw( Bio::Biblio::Ref); | |
104 | |
105 # | |
106 # a closure with a list of allowed attribute names (these names | |
107 # correspond with the allowed 'get' and 'set' methods); each name also | |
108 # keep what type the attribute should be (use 'undef' if it is a | |
109 # simple scalar) | |
110 # | |
111 { | |
112 my %_allowed = | |
113 ( | |
114 _first_page => undef, | |
115 _last_page => undef, | |
116 ); | |
117 | |
118 # return 1 if $attr is allowed to be set/get in this class | |
119 sub _accessible { | |
120 my ($self, $attr) = @_; | |
121 exists $_allowed{$attr} or $self->SUPER::_accessible ($attr); | |
122 } | |
123 | |
124 # return an expected type of given $attr | |
125 sub _attr_type { | |
126 my ($self, $attr) = @_; | |
127 if (exists $_allowed{$attr}) { | |
128 return $_allowed{$attr}; | |
129 } else { | |
130 return $self->SUPER::_attr_type ($attr); | |
131 } | |
132 } | |
133 } | |
134 | |
135 | |
136 1; | |
137 __END__ |