annotate variant_effect_predictor/Bio/Graphics/Glyph/triangle.pm @ 3:d30fa12e4cc5 default tip

Merge heads 2:a5976b2dce6f and 1:09613ce8151e which were created as a result of a recently fixed bug.
author devteam <devteam@galaxyproject.org>
date Mon, 13 Jan 2014 10:38:30 -0500
parents 1f6dce3d34e0
children
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1 package Bio::Graphics::Glyph::triangle;
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2 # DAS-compatible package to use for drawing a triangle
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3
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4 use strict;
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5 use vars '@ISA';
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6 @ISA = 'Bio::Graphics::Glyph::generic';
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7 use Bio::Graphics::Glyph::generic;
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8
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9 sub pad_left {
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10 my $self = shift;
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11 my $left = $self->SUPER::pad_left;
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12 return $left unless $self->option('point');
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13 my $extra = $self->option('height')/3;
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14 return $extra > $left ? $extra : $left;
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15 }
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16
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17 sub pad_right {
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18 my $self = shift;
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19 my $right = $self->SUPER::pad_right;
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20 return $right unless $self->option('point');
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21 my $extra = $self->option('height')/3;
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22 return $extra > $right ? $extra : $right;
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23 }
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24
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25 sub draw_component {
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26 my $self = shift;
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27 my $gd = shift;
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28 my $fg = $self->fgcolor;
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29 my $orient = $self->option('orient') || 'S';
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30
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31 # find the center and vertices
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32 my ($x1,$y1,$x2,$y2) = $self->calculate_boundaries(@_);
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33 my $xmid = ($x1+$x2)/2;
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34 my $ymid = ($y1+$y2)/2;
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35
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36 my ($vx1,$vy1,$vx2,$vy2,$vx3,$vy3);
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37
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38 #make an equilateral
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39 my ($p,$q) = ($self->option('height'),($x2-$x1)/2);
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40 if ($self->option('point')){
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41 $q = $p/sqrt(3); #2;
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42 $x1 = $xmid - $q; $x2 = $xmid + $q;
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43 $y1 = $ymid - $q; $y2 = $ymid + $q;
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44 }
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45
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46 if ($orient eq 'S'){$vx1=$x1;$vy1=$y1;$vx2=$x2;$vy2=$y1;$vx3=$xmid;$vy3=$y2;}
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47 elsif($orient eq 'N'){$vx1=$x1;$vy1=$y2;$vx2=$x2;$vy2=$y2;$vx3=$xmid;$vy3=$y1;}
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48 elsif($orient eq 'W'){$vx1=$x2;$vy1=$y1;$vx2=$x2;$vy2=$y2;$vx3=$x2-$p;$vy3=$ymid;}
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49 elsif($orient eq 'E'){$vx1=$x1;$vy1=$y1;$vx2=$x1;$vy2=$y2;$vx3=$x1+$p;$vy3=$ymid;}
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50
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51 # now draw the triangle
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52 $gd->line($vx1,$vy1,$vx2,$vy2,$fg);
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53 $gd->line($vx2,$vy2,$vx3,$vy3,$fg);
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54 $gd->line($vx3,$vy3,$vx1,$vy1,$fg);
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55
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56 if (my $c = $self->bgcolor){
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57 $gd->fillToBorder($xmid,$ymid,$fg,$c) if $orient eq 'S' || $orient eq 'N';
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58 $gd->fillToBorder($x1+1,$ymid,$fg,$c) if $orient eq 'E';
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59 $gd->fillToBorder($x2-1,$ymid,$fg,$c) if $orient eq 'W';
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60 }
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61 }
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62
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63 1;
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64
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65 __END__
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66
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67 =head1 NAME
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68
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69 Bio::Graphics::Glyph::triangle - The "triangle" glyph
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70
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71 =head1 SYNOPSIS
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72
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73 See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
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74
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75 =head1 DESCRIPTION
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76
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77 This glyph draws an equilateral triangle when -point is defined.
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78 It draws an isoceles triangle otherwise. It is possible to draw
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79 the triangle with the base on the N, S, E, or W side.
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80
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81 =head2 OPTIONS
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82
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83 In addition to the common options, the following glyph-specific
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84 options are recognized:
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85
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86 Option Description Default
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87 ------ ----------- -------
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88
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89 -point If true, the triangle 0
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90 will drawn at the center
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91 of the range, and not scaled
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92 to the feature width.
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93
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94 -orient On which side shall the S
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95 base be? (NSEW)
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96
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97 =head1 BUGS
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98
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99 Please report them.
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100
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101 =head1 SEE ALSO
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102
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103 L<Bio::Graphics::Panel>,
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104 L<Bio::Graphics::Glyph>,
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105 L<Bio::Graphics::Glyph::arrow>,
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106 L<Bio::Graphics::Glyph::cds>,
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107 L<Bio::Graphics::Glyph::crossbox>,
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108 L<Bio::Graphics::Glyph::diamond>,
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109 L<Bio::Graphics::Glyph::dna>,
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110 L<Bio::Graphics::Glyph::dot>,
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111 L<Bio::Graphics::Glyph::ellipse>,
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112 L<Bio::Graphics::Glyph::extending_arrow>,
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113 L<Bio::Graphics::Glyph::generic>,
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114 L<Bio::Graphics::Glyph::graded_segments>,
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115 L<Bio::Graphics::Glyph::heterogeneous_segments>,
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116 L<Bio::Graphics::Glyph::line>,
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117 L<Bio::Graphics::Glyph::pinsertion>,
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118 L<Bio::Graphics::Glyph::primers>,
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119 L<Bio::Graphics::Glyph::rndrect>,
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120 L<Bio::Graphics::Glyph::segments>,
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121 L<Bio::Graphics::Glyph::ruler_arrow>,
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122 L<Bio::Graphics::Glyph::toomany>,
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123 L<Bio::Graphics::Glyph::transcript>,
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124 L<Bio::Graphics::Glyph::transcript2>,
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125 L<Bio::Graphics::Glyph::translation>,
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126 L<Bio::Graphics::Glyph::triangle>,
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127 L<Bio::DB::GFF>,
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128 L<Bio::SeqI>,
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129 L<Bio::SeqFeatureI>,
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130 L<Bio::Das>,
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131 L<GD>
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132
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133 =head1 AUTHOR
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134
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135 Allen Day E<lt>day@cshl.orgE<gt>.
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136
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137 Copyright (c) 2001 Cold Spring Harbor Laboratory
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138
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139 This library is free software; you can redistribute it and/or modify
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140 it under the same terms as Perl itself. See DISCLAIMER.txt for
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141 disclaimers of warranty.
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142
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143 =cut