annotate variant_effect_predictor/Bio/Graphics/Glyph/rndrect.pm @ 3:d30fa12e4cc5 default tip

Merge heads 2:a5976b2dce6f and 1:09613ce8151e which were created as a result of a recently fixed bug.
author devteam <devteam@galaxyproject.org>
date Mon, 13 Jan 2014 10:38:30 -0500
parents 1f6dce3d34e0
children
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1 package Bio::Graphics::Glyph::rndrect;
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2
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3 use strict;
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4 use base 'Bio::Graphics::Glyph::generic';
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5
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6 # override draw_component to draw an round edge rect rather than a rectangle
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7 sub draw_component {
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8 my $self = shift;
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9 my $gd = shift;
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10 my ($left,$top) = @_;
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11 my($x1,$y1,$x2,$y2) = $self->calculate_boundaries(@_);#$self->bounds(@_);
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12 require GD;
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13 my $poly = GD::Polygon->new;
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14 my $boxheight = $y2 - $y1;
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15
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16 if (($x2-$x1) > 3) {
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17 $poly->addPt($x1+1, $y1+1);
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18 $poly->addPt($x1+2, $y1);
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19 $poly->addPt($x2-2, $y1);
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20 $poly->addPt($x2-1, $y1+1);
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21 $poly->addPt($x2, $y1 + $boxheight / 2)
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22 if (($y2 - $y1) > 6);
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23
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24 $poly->addPt($x2-1, $y2-1);
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25 $poly->addPt($x2-2, $y2);
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26 $poly->addPt($x1+2, $y2);
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27 $poly->addPt($x1+1, $y2-1);
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28 $poly->addPt($x1, $y1 + $boxheight / 2)
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29 if (($y2 - $y1) > 6);
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30 } else {
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31 $poly->addPt($x1, $y1);
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32 $poly->addPt($x2, $y1);
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33
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34 $poly->addPt($x2, $y2);
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35 $poly->addPt($x1, $y2);
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36 }
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37
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38 $gd->filledPolygon($poly, $self->fillcolor);
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39
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40 $gd->polygon($poly, $self->fgcolor);
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41 }
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42
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43 # group sets connector to 'solid'
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44 sub connector {
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45 my $self = shift;
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46 return $self->SUPER::connector(@_) if $self->all_callbacks;
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47 return 'solid';
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48 }
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49
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50 sub bump {
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51 my $self = shift;
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52 return $self->SUPER::bump(@_) if $self->all_callbacks;
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53 return 0;
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54 }
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55
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56
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57 1;
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58
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59
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60 =head1 NAME
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61
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62 Bio::Graphics::Glyph::rndrect - The "round rect" glyph
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63
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64 =head1 SYNOPSIS
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65
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66 See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
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67
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68 =head1 DESCRIPTION
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69
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70 This glyph was designed to show seq features in round edge rectangles.
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71 The glyph will be a rectangle if its width is E<lt> 4 pixels
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72
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73 =head1 BUGS
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74
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75 Please report them.
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76
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77 =head1 SEE ALSO
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78
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79
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80 L<Bio::Graphics::Panel>,
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81 L<Bio::Graphics::Glyph>,
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82 L<Bio::Graphics::Glyph::arrow>,
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83 L<Bio::Graphics::Glyph::cds>,
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84 L<Bio::Graphics::Glyph::crossbox>,
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85 L<Bio::Graphics::Glyph::diamond>,
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86 L<Bio::Graphics::Glyph::dna>,
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87 L<Bio::Graphics::Glyph::dot>,
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88 L<Bio::Graphics::Glyph::ellipse>,
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89 L<Bio::Graphics::Glyph::extending_arrow>,
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90 L<Bio::Graphics::Glyph::generic>,
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91 L<Bio::Graphics::Glyph::graded_segments>,
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92 L<Bio::Graphics::Glyph::heterogeneous_segments>,
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93 L<Bio::Graphics::Glyph::line>,
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94 L<Bio::Graphics::Glyph::pinsertion>,
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95 L<Bio::Graphics::Glyph::primers>,
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96 L<Bio::Graphics::Glyph::rndrect>,
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97 L<Bio::Graphics::Glyph::segments>,
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98 L<Bio::Graphics::Glyph::ruler_arrow>,
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99 L<Bio::Graphics::Glyph::toomany>,
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100 L<Bio::Graphics::Glyph::transcript>,
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101 L<Bio::Graphics::Glyph::transcript2>,
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102 L<Bio::Graphics::Glyph::translation>,
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103 L<Bio::Graphics::Glyph::triangle>,
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104 L<Bio::DB::GFF>,
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105 L<Bio::SeqI>,
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106 L<Bio::SeqFeatureI>,
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107 L<Bio::Das>,
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108 L<GD>
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109
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110 =head1 AUTHOR
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111
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112 Shengqiang Shu E<lt>sshu@bdgp.lbl.govE<gt>
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113
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114 Copyright (c) 2001 BDGP
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115
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116 This library is free software; you can redistribute it and/or modify
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117 it under the same terms as Perl itself. See DISCLAIMER.txt for
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118 disclaimers of warranty.
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119
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120 =cut