annotate variant_effect_predictor/Bio/EnsEMBL/Variation/Pipeline/RebuildIndexes.pm @ 3:d30fa12e4cc5 default tip

Merge heads 2:a5976b2dce6f and 1:09613ce8151e which were created as a result of a recently fixed bug.
author devteam <devteam@galaxyproject.org>
date Mon, 13 Jan 2014 10:38:30 -0500
parents 1f6dce3d34e0
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1 package Bio::EnsEMBL::Variation::Pipeline::RebuildIndexes;
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3 use strict;
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4 use warnings;
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6 use base qw(Bio::EnsEMBL::Variation::Pipeline::BaseVariationProcess);
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8 sub run {
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10 my $self = shift;
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12 my $tables = $self->param('tables');
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14 my $var_dba = $self->get_species_adaptor('variation');
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16 my $dbc = $var_dba->dbc;
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18 for my $table (@$tables) {
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19 $dbc->do("ALTER TABLE $table ENABLE KEYS")
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20 or warn "Failed to enable keys on $table";
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21 }
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22 }
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24 1;
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