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0
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1 =pod
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2
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3 =head1 LICENSE
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4
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5 Copyright (c) 1999-2012 The European Bioinformatics Institute and
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6 Genome Research Limited. All rights reserved.
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7
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8 This software is distributed under a modified Apache license.
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9 For license details, please see
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10
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11 http://www.ensembl.org/info/about/code_licence.html
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12
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13 =head1 CONTACT
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14
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15 Please email comments or questions to the public Ensembl
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16 developers list at <dev@ensembl.org>.
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17
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18 Questions may also be sent to the Ensembl help desk at
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19 <helpdesk@ensembl.org>.
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20
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21 =head1 NAME
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22
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23 Bio::EnsEMBL::Pipeline::FASTA::FindDirs
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24
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25 =head1 DESCRIPTION
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26
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27 Finds all directories under the given species directory. This is used to
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28 flow any further processing only dependent on the directory and so
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29 inherits from JobFactory and Bio::EnsEMBL::Pipeline::FASTA::Base to bring in methods which
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30 know about the FTP structure.
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31
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32 Allowed parameters are:
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33
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34 =over 8
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35
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36 =item species - The species to work with
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37
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38 =back
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39
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40 =cut
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41
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42 package Bio::EnsEMBL::Pipeline::FASTA::FindDirs;
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43
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44 use strict;
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45 use warnings;
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46
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47 use base qw/Bio::EnsEMBL::Pipeline::FindDirs Bio::EnsEMBL::Pipeline::FASTA::Base/;
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48
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49 use File::Spec;
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50
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51 sub fetch_input {
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52 my ($self) = @_;
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53 $self->throw("No 'species' parameter specified") unless $self->param('species');
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54 $self->param('path', $self->fasta_path());
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55 $self->SUPER::fetch_input();
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56 return;
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57 }
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58
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59 1;
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