annotate variant_effect_predictor/Bio/Biblio/Journal.pm @ 3:d30fa12e4cc5 default tip

Merge heads 2:a5976b2dce6f and 1:09613ce8151e which were created as a result of a recently fixed bug.
author devteam <devteam@galaxyproject.org>
date Mon, 13 Jan 2014 10:38:30 -0500
parents 1f6dce3d34e0
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1 # $Id: Journal.pm,v 1.6 2002/10/22 07:45:11 lapp Exp $
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2 #
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3 # BioPerl module for Bio::Biblio::Journal
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4 #
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5 # Cared for by Martin Senger <senger@ebi.ac.uk>
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6 # For copyright and disclaimer see below.
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7
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8 # POD documentation - main docs before the code
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9
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10 =head1 NAME
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11
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12 Bio::Biblio::Journal - Representation of a journal
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13
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14 =head1 SYNOPSIS
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15
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16 $obj = new Bio::Biblio::Journal (-name => 'The Perl Journal',
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17 -issn => '1087-903X');
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18 --- OR ---
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19
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20 $obj = new Bio::Biblio::Journal;
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21 $obj->issn ('1087-903X');
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22
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23 =head1 DESCRIPTION
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24
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25 A storage object for a journal.
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26 See its place in the class hierarchy in
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27 http://industry.ebi.ac.uk/openBQS/images/bibobjects_perl.gif
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28
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29 =head2 Attributes
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30
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31 The following attributes are specific to this class
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32 (however, you can also set and get all attributes defined in the parent classes):
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33
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34 abbreviation
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35 issn
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36 name
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37 provider type: Bio::Biblio::Provider
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38
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39 =head1 SEE ALSO
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40
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41 =over
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42
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43 =item *
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44
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45 OpenBQS home page: http://industry.ebi.ac.uk/openBQS
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46
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47 =item *
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48
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49 Comments to the Perl client: http://industry.ebi.ac.uk/openBQS/Client_perl.html
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50
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51 =back
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52
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53 =head1 FEEDBACK
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54
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55 =head2 Mailing Lists
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56
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57 User feedback is an integral part of the evolution of this and other
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58 Bioperl modules. Send your comments and suggestions preferably to
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59 the Bioperl mailing list. Your participation is much appreciated.
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60
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61 bioperl-l@bioperl.org - General discussion
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62 http://bioperl.org/MailList.shtml - About the mailing lists
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63
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64 =head2 Reporting Bugs
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65
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66 Report bugs to the Bioperl bug tracking system to help us keep track
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67 of the bugs and their resolution. Bug reports can be submitted via
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68 email or the web:
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69
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70 bioperl-bugs@bioperl.org
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71 http://bugzilla.bioperl.org/
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72
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73 =head1 AUTHORS
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74
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75 Heikki Lehvaslaiho (heikki@ebi.ac.uk),
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76 Martin Senger (senger@ebi.ac.uk)
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77
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78 =head1 COPYRIGHT
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79
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80 Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
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81
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82 This module is free software; you can redistribute it and/or modify
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83 it under the same terms as Perl itself.
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84
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85 =head1 DISCLAIMER
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86
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87 This software is provided "as is" without warranty of any kind.
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88
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89 =cut
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90
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91
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92 # Let the code begin...
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93
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94 package Bio::Biblio::Journal;
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95 use strict;
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96 use vars qw(@ISA);
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97
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98 use Bio::Biblio::BiblioBase;
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99
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100 @ISA = qw(Bio::Biblio::BiblioBase);
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101
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102 #
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103 # a closure with a list of allowed attribute names (these names
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104 # correspond with the allowed 'get' and 'set' methods); each name also
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105 # keep what type the attribute should be (use 'undef' if it is a
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106 # simple scalar)
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107 #
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108 {
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109 my %_allowed =
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110 (
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111 _abbreviation => undef,
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112 _issn => undef,
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113 _name => undef,
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114 _provider => 'Bio::Biblio::Provider',
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115 );
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116
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117 # return 1 if $attr is allowed to be set/get in this class
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118 sub _accessible {
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119 my ($self, $attr) = @_;
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120 exists $_allowed{$attr};
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121 }
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122
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123 # return an expected type of given $attr
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124 sub _attr_type {
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125 my ($self, $attr) = @_;
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126 $_allowed{$attr};
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127 }
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128 }
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129
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130 1;
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131 __END__