annotate variant_effect_predictor/Bio/Graphics/Glyph/oval.pm @ 2:a5976b2dce6f

changing defualt values for ensembl database
author mahtabm
date Thu, 11 Apr 2013 17:15:42 +1000
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1 package Bio::Graphics::Glyph::oval;
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2
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3 use strict;
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4 use vars '@ISA';
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5 use Bio::Graphics::Glyph::ellipse;
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6 @ISA = 'Bio::Graphics::Glyph::ellipse';
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7
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8 1;
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9
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10 __END__
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11
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12 =head1 NAME
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13
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14 Bio::Graphics::Glyph::oval - The "oval" glyph
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15
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16 =head1 SYNOPSIS
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17
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18 See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
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19
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20 =head1 DESCRIPTION
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21
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22 This glyph draws an oval instead of a box. It is an alias for the
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23 "ellipse" glyph.
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24
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25 =head2 OPTIONS
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26
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27 The following options are standard among all Glyphs. See
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28 L<Bio::Graphics::Glyph> for a full explanation.
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29
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30 Option Description Default
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31 ------ ----------- -------
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32
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33 -fgcolor Foreground color black
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34
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35 -outlinecolor Synonym for -fgcolor
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36
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37 -bgcolor Background color turquoise
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38
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39 -fillcolor Synonym for -bgcolor
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40
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41 -linewidth Line width 1
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42
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43 -height Height of glyph 10
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44
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45 -font Glyph font gdSmallFont
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46
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47 -connector Connector type 0 (false)
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48
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49 -connector_color
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50 Connector color black
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51
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52 -label Whether to draw a label 0 (false)
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53
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54 -description Whether to draw a description 0 (false)
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55
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56 =head1 BUGS
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57
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58 Please report them.
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59
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60 =head1 SEE ALSO
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61
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62 L<Bio::Graphics::Panel>,
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63 L<Bio::Graphics::Glyph>,
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64 L<Bio::Graphics::Glyph::arrow>,
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65 L<Bio::Graphics::Glyph::cds>,
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66 L<Bio::Graphics::Glyph::crossbox>,
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67 L<Bio::Graphics::Glyph::diamond>,
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68 L<Bio::Graphics::Glyph::dna>,
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69 L<Bio::Graphics::Glyph::dot>,
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70 L<Bio::Graphics::Glyph::ellipse>,
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71 L<Bio::Graphics::Glyph::extending_arrow>,
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72 L<Bio::Graphics::Glyph::generic>,
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73 L<Bio::Graphics::Glyph::graded_segments>,
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74 L<Bio::Graphics::Glyph::heterogeneous_segments>,
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75 L<Bio::Graphics::Glyph::line>,
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76 L<Bio::Graphics::Glyph::pinsertion>,
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77 L<Bio::Graphics::Glyph::primers>,
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78 L<Bio::Graphics::Glyph::rndrect>,
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79 L<Bio::Graphics::Glyph::segments>,
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80 L<Bio::Graphics::Glyph::ruler_arrow>,
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81 L<Bio::Graphics::Glyph::toomany>,
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82 L<Bio::Graphics::Glyph::transcript>,
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83 L<Bio::Graphics::Glyph::transcript2>,
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84 L<Bio::Graphics::Glyph::translation>,
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85 L<Bio::Graphics::Glyph::triangle>,
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86 L<Bio::DB::GFF>,
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87 L<Bio::SeqI>,
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88 L<Bio::SeqFeatureI>,
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89 L<Bio::Das>,
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90 L<GD>
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91
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92 =head1 AUTHOR
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93
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94 Lincoln Stein E<lt>lstein@cshl.orgE<gt>
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95
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96 Copyright (c) 2001 Cold Spring Harbor Laboratory
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97
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98 This library is free software; you can redistribute it and/or modify
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99 it under the same terms as Perl itself. See DISCLAIMER.txt for
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100 disclaimers of warranty.
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101
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102 =cut