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1 =head1 LICENSE
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2
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3 Copyright (c) 1999-2012 The European Bioinformatics Institute and
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4 Genome Research Limited. All rights reserved.
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5
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6 This software is distributed under a modified Apache license.
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7 For license details, please see
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8
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9 http://www.ensembl.org/info/about/code_licence.html
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10
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11 =head1 CONTACT
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12
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13 Please email comments or questions to the public Ensembl
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14 developers list at <dev@ensembl.org>.
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15
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16 Questions may also be sent to the Ensembl help desk at
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17 <helpdesk@ensembl.org>.
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18
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19 =cut
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20
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21 =head1 NAME
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22
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23 Bio::EnsEMBL::DBSQL::SOTermAdaptor
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24
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25 =head1 DESCRIPTION
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26
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27 A specialization of Bio::EnsEMBL::DBSQL::OntologyTermAdaptor,
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28 specifically for Sequence ontology (SO) terms. See the
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29 documentation of Bio::EnsEMBL::DBSQL::OntologyTermAdaptor for
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30 further information.
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31
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32 =head1 METHODS
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33
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34 =cut
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35
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36 package Bio::EnsEMBL::DBSQL::SOTermAdaptor;
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37
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38 use strict;
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39 use warnings;
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40
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41 use base qw( Bio::EnsEMBL::DBSQL::OntologyTermAdaptor );
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42
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43 =head2 new
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44
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45 Arg [1] : Bio::EnsEMBL::DBSQL::DBAdaptor
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46 Argument required for parent class
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47 Bio::EnsEMBL::DBSQL::BaseAdaptor.
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48
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49 Description : Creates an ontology term adaptor for SO terms.
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50
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51 Example :
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52
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53 my $go_adaptor = Bio::EnsEMBL::DBSQL::SOTermAdaptor->new( $dba );
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54
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55 Return type : Bio::EnsEMBL::DBSQL::SOTermAdaptor
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56
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57 =cut
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58
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59 sub new {
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60 my ( $proto, $dba ) = @_;
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61
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62 my $this = $proto->SUPER::new( $dba, 'SO' );
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63
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64 return $this;
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65 }
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66
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67 1;
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