diff variant_effect_predictor/Bio/Biblio/Provider.pm @ 0:2bc9b66ada89 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/variant_effect_predictor/Bio/Biblio/Provider.pm	Thu Apr 11 06:29:17 2013 -0400
@@ -0,0 +1,126 @@
+# $Id: Provider.pm,v 1.4 2002/10/22 07:45:11 lapp Exp $
+#
+# BioPerl module for Bio::Biblio::Provider
+#
+# Cared for by Martin Senger <[e-mail]>
+# For copyright and disclaimer see below.
+
+# POD documentation - main docs before the code
+
+=head1 NAME
+
+Bio::Biblio::Provider - Representation of a general provider
+
+=head1 SYNOPSIS
+
+    # usually this class is not instantiated but can be...
+    $obj = new Bio::Biblio::Provider (-type => 'Department');
+
+ --- OR ---
+
+    $obj = new Bio::Biblio::Provider;
+    $obj->type ('Department');
+
+=head1 DESCRIPTION
+
+A storage object for a general bibliographic resource provider
+(a rpovider can be a person, a organisation, or even a program).
+
+=head2 Attributes
+
+The following attributes are specific to this class, 
+and they are inherited by all provider types.
+
+  type
+
+=head1 SEE ALSO
+
+=over
+
+=item *
+
+OpenBQS home page: http://industry.ebi.ac.uk/openBQS
+
+=item *
+
+Comments to the Perl client: http://industry.ebi.ac.uk/openBQS/Client_perl.html
+
+=back
+
+=head1 FEEDBACK
+
+=head2 Mailing Lists
+
+User feedback is an integral part of the evolution of this and other
+Bioperl modules. Send your comments and suggestions preferably to
+the Bioperl mailing list.  Your participation is much appreciated.
+
+  [e-mail]              - General discussion
+  http://bioperl.org/MailList.shtml  - About the mailing lists
+
+=head2 Reporting Bugs
+
+Report bugs to the Bioperl bug tracking system to help us keep track
+of the bugs and their resolution. Bug reports can be submitted via
+email or the web:
+
+  [e-mail]
+  http://bugzilla.bioperl.org/
+
+=head1 AUTHORS
+
+Heikki Lehvaslaiho ([e-mail]),
+Martin Senger ([e-mail])
+
+=head1 COPYRIGHT
+
+Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
+
+This module is free software; you can redistribute it and/or modify
+it under the same terms as Perl itself.
+
+=head1 DISCLAIMER
+
+This software is provided "as is" without warranty of any kind.
+
+=cut
+
+
+# Let the code begin...
+
+
+package Bio::Biblio::Provider;
+use strict;
+use vars qw(@ISA $AUTOLOAD);
+
+use Bio::Biblio::BiblioBase;
+
+@ISA = qw(Bio::Biblio::BiblioBase);
+
+#
+# a closure with a list of allowed attribute names (these names
+# correspond with the allowed 'get' and 'set' methods); each name also
+# keep what type the attribute should be (use 'undef' if it is a
+# simple scalar)
+#
+{
+    my %_allowed =
+	(
+	 _type => undef,
+	 );
+
+    # return 1 if $attr is allowed to be set/get in this class
+    sub _accessible {
+	my ($self, $attr) = @_;
+	exists $_allowed{$attr};
+    }
+
+    # return an expected type of given $attr
+    sub _attr_type {
+	my ($self, $attr) = @_;
+	$_allowed{$attr};
+    }
+}
+
+1;
+__END__