annotate variant_effect_predictor/Bio/Event/EventHandlerI.pm @ 0:2bc9b66ada89 draft default tip

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author mahtabm
date Thu, 11 Apr 2013 06:29:17 -0400
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1 # $Id: EventHandlerI.pm,v 1.5 2002/10/22 07:45:14 lapp Exp $
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2 #
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3 # BioPerl module for Bio::Event::EventHandlerI
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4 #
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5 # Cared for by Jason Stajich <jason@bioperl.org>
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6 #
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7 # Copyright Jason Stajich
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8 #
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9 # You may distribute this module under the same terms as perl itself
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10
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11 # POD documentation - main docs before the code
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12
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13 =head1 NAME
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14
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15 Bio::Event::EventHandlerI - An Event Handler Interface
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16
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17 =head1 SYNOPSIS
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18
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19 # do not use this module directly
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20 # See Bio::SearchIO::SearchResultEventHandler for an example of
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21 # implementation.
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22
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23 =head1 DESCRIPTION
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24
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25 This interface describes the basic methods required for a
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26 EventHandlers. These are essentially SAX methods.
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27
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28 =head1 FEEDBACK
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29
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30 =head2 Mailing Lists
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31
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32 User feedback is an integral part of the evolution of this and other
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33 Bioperl modules. Send your comments and suggestions preferably to
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34 the Bioperl mailing list. Your participation is much appreciated.
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35
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36 bioperl-l@bioperl.org - General discussion
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37 http://bioperl.org/MailList.shtml - About the mailing lists
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38
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39 =head2 Reporting Bugs
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40
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41 Report bugs to the Bioperl bug tracking system to help us keep track
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42 of the bugs and their resolution. Bug reports can be submitted via
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43 email or the web:
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44
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45 bioperl-bugs@bioperl.org
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46 http://bugzilla.bioperl.org/
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47
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48 =head1 AUTHOR - Jason Stajich
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49
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50 Email jason@bioperl.org
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51
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52 Describe contact details here
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53
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54 =head1 CONTRIBUTORS
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55
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56 Additional contributors names and emails here
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57
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58 =head1 APPENDIX
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59
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60 The rest of the documentation details each of the object methods.
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61 Internal methods are usually preceded with a _
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62
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63 =cut
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64
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65
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66 # Let the code begin...
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67
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68
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69 package Bio::Event::EventHandlerI;
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70 use vars qw(@ISA);
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71 use strict;
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72 use Bio::Root::RootI;
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73 use Carp;
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74
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75 @ISA = qw(Bio::Root::RootI);
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76
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77 =head2 will_handle
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78
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79 Title : will_handle
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80 Usage : if( $handler->will_handle($event_type) ) { ... }
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81 Function: Tests if this event builder knows how to process a specific event
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82 Returns : boolean
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83 Args : event type name
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84
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85
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86 =cut
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87
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88 sub will_handle{
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89 my ($self,$type) = @_;
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90 $self->throw_not_implemented();
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91 }
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92
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93 =head2 SAX methods
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94
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95 =cut
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96
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97 =head2 start_document
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98
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99 Title : start_document
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100 Usage : $eventgenerator->start_document();
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101 Function: Handle a start document event
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102 Returns : none
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103 Args : none
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104
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105
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106 =cut
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107
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108 sub start_document{
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109 my ($self,@args) = @_;
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110 $self->throw_not_implemented;
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111 }
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112
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113 =head2 end_document
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114
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115 Title : end_document
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116 Usage : $eventgenerator->end_document();
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117 Function: Handle an end document event
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118 Returns : none
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119 Args : none
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120
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121
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122 =cut
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123
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124 sub end_document{
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125 my ($self,@args) = @_;
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126 $self->throw_not_implemented;
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127 }
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128
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129 =head2 start_element
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130
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131 Title : start_element
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132 Usage : $eventgenerator->start_element
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133 Function: Handles a start element event
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134 Returns : none
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135 Args : hashref with at least 2 keys 'Data' and 'Name'
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136
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137
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138 =cut
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139
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140 sub start_element{
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141 my ($self,@args) = @_;
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142 $self->throw_not_implemented;
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143 }
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144
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145 =head2 end_element
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146
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147 Title : start_element
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148 Usage : $eventgenerator->end_element
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149 Function: Handles an end element event
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150 Returns : none
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151 Args : hashref with at least 2 keys 'Data' and 'Name'
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152
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153
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154 =cut
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155
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156 sub end_element{
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157 my ($self,@args) = @_;
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158 $self->throw_not_implemented;
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159 }
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160
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161
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162 =head2 in_element
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163
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164 Title : in_element
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165 Usage : if( $eventgenerator->in_element($element) ) {}
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166 Function: Test if we are in a particular element
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167 This is different than 'within' because 'in' tests only
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168 if one has reached a specific element.
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169 Returns : boolean
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170 Args : string element name
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171
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172
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173 =cut
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174
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175 sub in_element{
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176 my ($self,@args) = @_;
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177 $self->throw_not_implemented;
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178
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179 }
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180
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181 =head2 within_element
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182
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183 Title : within_element
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184 Usage : if( $eventgenerator->within_element($element) ) {}
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185 Function: Test if we are within a particular element
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186 This is different than 'in' because within can be tested
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187 for a whole block.
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188 Returns : boolean
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189 Args : string element name
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190
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191
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192 =cut
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193
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194 sub within_element{
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195 my ($self,@args) = @_;
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196 $self->throw_not_implemented;
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197 }
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198
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199 =head2 characters
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200
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201 Title : characters
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202 Usage : $eventgenerator->characters($str)
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203 Function: Send a character events
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204 Returns : none
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205 Args : string
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206
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207
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208 =cut
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209
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210 sub characters{
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211 my ($self,@args) = @_;
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212 $self->throw_not_implemented;
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213 }
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214
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215 1;