annotate variant_effect_predictor/Bio/DescribableI.pm @ 0:2bc9b66ada89 draft default tip

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author mahtabm
date Thu, 11 Apr 2013 06:29:17 -0400
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1 # $Id: DescribableI.pm,v 1.6 2002/10/25 01:29:37 lapp Exp $
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2
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3 #
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4 # This module is licensed under the same terms as Perl itself. You use,
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5 # modify, and redistribute it under the terms of the Perl Artistic License.
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6 #
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7
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8 =head1 NAME
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9
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10 Bio::DescribableI - interface for objects with human readable names and descriptions
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11
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12 =head1 SYNOPSIS
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13
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14
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15 # to test this is a describable object
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16
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17 $obj->isa("Bio::DescribableI") ||
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18 $obj->throw("$obj does not implement the Bio::DescribableI interface");
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19
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20 # accessors
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21
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22 $name = $obj->display_name();
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23 $desc = $obj->description();
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25
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26
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27 =head1 DESCRIPTION
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28
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29 This interface describes methods expected on describable objects, ie
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30 ones which have human displayable names and descriptions
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31
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32 =head1 FEEDBACK
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33
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34 =head2 Mailing Lists
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35
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36 User feedback is an integral part of the evolution of this and other
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37 Bioperl modules. Send your comments and suggestions preferably to one
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38 of the Bioperl mailing lists. Your participation is much appreciated.
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39
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40 bioperl-l@bioperl.org - General discussion
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41 http://bio.perl.org/MailList.html - About the mailing lists
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42
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43 =head2 Reporting Bugs
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44
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45 Report bugs to the Bioperl bug tracking system to help us keep track
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46 the bugs and their resolution. Bug reports can be submitted via email
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47 or the web:
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48
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49 bioperl-bugs@bio.perl.org
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50 http://bugzilla.bioperl.org/
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51
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52 =head1 AUTHOR - Ewan Birney
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53
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54 Email birney@sanger.ac.uk
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55
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56 =cut
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57
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58 package Bio::DescribableI;
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59 use vars qw(@ISA );
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60 use strict;
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61 use Bio::Root::RootI;
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62
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63
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64 @ISA = qw(Bio::Root::RootI);
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65
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66 =head1 Implementation Specific Functions
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67
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68 These functions are the ones that a specific implementation must
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69 define.
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70
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71 =head2 display_name
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72
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73 Title : display_name
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74 Usage : $string = $obj->display_name()
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75 Function: A string which is what should be displayed to the user
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76 the string should have no spaces (ideally, though a cautious
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77 user of this interface would not assumme this) and should be
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78 less than thirty characters (though again, double checking
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79 this is a good idea)
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80 Returns : A scalar
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81 Status : Virtual
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82
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83 =cut
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84
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85 sub display_name {
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86 my ($self) = @_;
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87 $self->throw_not_implemented();
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88 }
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89
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90
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91 =head2 description
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92
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93 Title : description
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94 Usage : $string = $obj->description()
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95 Function: A text string suitable for displaying to the user a
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96 description. This string is likely to have spaces, but
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97 should not have any newlines or formatting - just plain
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98 text. The string should not be greater than 255 characters
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99 and clients can feel justified at truncating strings at 255
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100 characters for the purposes of display
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101 Returns : A scalar
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102 Status : Virtual
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103
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104 =cut
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105
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106 sub description {
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107 my ($self) = @_;
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108 $self->throw_not_implemented();
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109 }
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110
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111 1;