Mercurial > repos > lparsons > sam_stats

annotate test-data/testout.txt @ 2:f0f478955af3 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit 394834f8f34909961cfbf6252fefbdc63342d78d-dirty
author lparsons
date Thu, 16 Jul 2015 17:28:31 -0400
parents f3aa796d21d6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
1 reads 100
1
f3aa796d21d6 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit 394834f8f34909961cfbf6252fefbdc63342d78d-dirty
lparsons
parents: 0
diff changeset
2 version 1.38.763
0
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
3 mapped reads 11
1
f3aa796d21d6 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit 394834f8f34909961cfbf6252fefbdc63342d78d-dirty
lparsons
parents: 0
diff changeset
4 pct align 11.000000
0
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
5 mapped bases 377
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
6 phred 33
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
7 forward 0
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
8 reverse 11
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
9 len max 48
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
10 len mean 34.2727
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
11 len stdev 9.4137
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
12 mapq mean 255.0000
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
13 mapq stdev 0.0000
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
14 mapq Q1 255.00
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
15 mapq median 255.00
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
16 mapq Q3 255.00
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
17 snp rate 0.000000
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
18 pct mismatch 0.0000
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
19 base qual mean 31.5650
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
20 base qual stdev 3.2627
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
21 %A 27.5862
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
22 %C 34.4828
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
23 %G 16.7109
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
24 %T 21.2202
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
25 %PCRPRIMER1 8.753316
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
26 %PCRPRIMER1+1 45.358090
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
27 %PCRPRIMER1+2 9.814324
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
28 %PCRPRIMER2+1 36.074271
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
29 num ref seqs 4
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
lparsons
parents:
diff changeset
30 num ref aligned 4