Mercurial > repos > lparsons > htseq_count
changeset 15:f7803cda345d
Fixed test output, added missing pysam dependency
| author | lparsons |
|---|---|
| date | Fri, 11 Apr 2014 15:48:40 -0400 |
| parents | c1db55359a86 |
| children | c9bacde2356c |
| files | test-data/htseq-test-paired_othercounts.tsv test-data/htseq-test_othercounts.tsv tool_dependencies.xml |
| diffstat | 3 files changed, 14 insertions(+), 10 deletions(-) [+] |
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--- a/test-data/htseq-test-paired_othercounts.tsv Fri Apr 11 15:00:37 2014 -0400 +++ b/test-data/htseq-test-paired_othercounts.tsv Fri Apr 11 15:48:40 2014 -0400 @@ -1,5 +1,5 @@ -no_feature 533 -ambiguous 1 -too_low_aQual 0 -not_aligned 0 -alignment_not_unique 0 +_feature 755 +__ambiguous 0 +__too_low_aQual 96 +__not_aligned 0 +__alignment_not_unique 0
--- a/test-data/htseq-test_othercounts.tsv Fri Apr 11 15:00:37 2014 -0400 +++ b/test-data/htseq-test_othercounts.tsv Fri Apr 11 15:48:40 2014 -0400 @@ -1,5 +1,5 @@ -no_feature 19 -ambiguous 0 -too_low_aQual 0 -not_aligned 1336 -alignment_not_unique 0 +__no_feature 19 +__ambiguous 0 +__too_low_aQual 0 +__not_aligned 1336 +__alignment_not_unique 0
--- a/tool_dependencies.xml Fri Apr 11 15:00:37 2014 -0400 +++ b/tool_dependencies.xml Fri Apr 11 15:48:40 2014 -0400 @@ -9,6 +9,10 @@ <repository changeset_revision="233326db3402" name="package_samtools_0_1_19" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> + <package name="pysam" version="0.7.7"> + <repository changeset_revision="240d1ad9f207" name="package_pysam_0_7_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="htseq" version="0.6.1"> <install version="1.0"> <actions>