Mercurial > repos > lparsons > htseq_count

diff htseq-count.xml @ 4:359d40333595

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Added tool dependencies, updated tests to use small datasets
author Lance Parsons <lparsons@princeton.edu>
date Tue, 04 Sep 2012 13:34:05 -0400
parents c6d73933f601
children 0a835934d792
line wrap: on
line diff
--- a/htseq-count.xml	Fri Aug 31 16:50:42 2012 -0400
+++ b/htseq-count.xml	Tue Sep 04 13:34:05 2012 -0400
@@ -2,8 +2,7 @@
     <description> - Count aligned reads in a BAM file that overlap features in a GFF file</description>
     <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command>
     <requirements>
-        <requirement type="package" version="1.6.2">numpy</requirement>
-        <requirement type="package" version="0.5.3.p9">htseq</requirement>
+        <requirement type="package" version="0.5.3p9">htseq</requirement>
         <requirement type="package" version="0.1.18">samtools</requirement>
     </requirements>
     <command>
@@ -127,7 +126,6 @@
             <output name="samoutfile" file="htseq-test_samout.bam" />
         </test>
         -->
-
     </tests>
 
     <help>
@@ -224,5 +222,4 @@
 Laboratory (EMBL). (c) 2010. Released under the terms of the GNU General
 Public License v3. Part of the 'HTSeq' framework.
     </help>
-
 </tool>