Mercurial > repos > lparsons > htseq_count
comparison htseq-count.xml @ 16:c9bacde2356c
Added missing dependency
| author | lparsons |
|---|---|
| date | Fri, 11 Apr 2014 15:50:33 -0400 |
| parents | c1db55359a86 |
| children | 3102bfcac0d6 |
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| 15:f7803cda345d | 16:c9bacde2356c |
|---|---|
| 3 <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command> | 3 <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="1.7.1">numpy</requirement> | 5 <requirement type="package" version="1.7.1">numpy</requirement> |
| 6 <requirement type="package" version="0.6.1">htseq</requirement> | 6 <requirement type="package" version="0.6.1">htseq</requirement> |
| 7 <requirement type="package" version="0.1.19">samtools</requirement> | 7 <requirement type="package" version="0.1.19">samtools</requirement> |
| 8 <requirement type="package" version="0.7.7">pysam</requirement> | |
| 8 </requirements> | 9 </requirements> |
| 9 <command> | 10 <command> |
| 10 ##set up input files | 11 ##set up input files |
| 11 #set $reference_fasta_filename = "localref.fa" | 12 #set $reference_fasta_filename = "localref.fa" |
| 12 #if $samout_conditional.samout: | 13 #if $samout_conditional.samout: |